Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,754,900 – 2,754,991 |
Length | 91 |
Max. P | 0.747295 |
Location | 2,754,900 – 2,754,991 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 72.83 |
Mean single sequence MFE | -15.73 |
Consensus MFE | -1.73 |
Energy contribution | -1.85 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.43 |
Mean z-score | -1.63 |
Structure conservation index | 0.11 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747295 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2754900 91 + 22224390 GGUAAUACCCU-CUAUGCAUAGAGGCUAUAAUGAGGAGAGAAAACAUACAAAAAGUGAAAA--AAAAACUUGUUUCACCCCACCCACCACCACC (((.(((.(((-(((....)))))).)))..((.((.((((...........((((.....--....)))).)))).)).))...)))...... ( -15.40) >DroPse_CAF1 212000 74 + 1 CUGCAUACCCCAGGGUGUGUGAAGGGUAUAAUGAGGAGAGAAAACAUAUAACAAGUGAAA-----AAGCUUGUUCU-C--------------UC ..(((((((....)))))))...............((((((.........((((((....-----..)))))))))-)--------------)) ( -21.00) >DroSec_CAF1 142991 80 + 1 UGGAAUACCCU-CUAUGCAUUGAGGCUAUAAUGAGGAGAGAAAACAUACAAAAAGUGAAA-----AAACUUGUUCCGCCCCAC--------AAC .(((((...((-((...(((((......)))))...))))............((((....-----..))))))))).......--------... ( -14.20) >DroEre_CAF1 159539 83 + 1 UUGCAUACCCU-UUAUGCAUAGAGGCUAUAAUGAGGAGAGAAAACAUAGAAAAAGUGAAAAAAAAAAACUCGUUUGGCCC------G----UUC .((((((....-.))))))..(.(((((.((((((.........(((.......)))...........))))))))))))------.----... ( -16.35) >DroYak_CAF1 153470 84 + 1 UUGAAUACCCU-GUAUUCAUAGCGUCUAUAAUGAGGAGAGAAAACACACAAAAAGUGAAA-----AAACUUGUUUCACCCCAUUCAC----UUC .(((((((...-)))))))..........((((.((.((((...........((((....-----..)))).)))).)).))))...----... ( -11.70) >consensus UUGAAUACCCU_CUAUGCAUAGAGGCUAUAAUGAGGAGAGAAAACAUACAAAAAGUGAAA_____AAACUUGUUUCACCCCA_________AUC ..(((((......)))))...........((((((...........(((.....)))...........)))))).................... ( -1.73 = -1.85 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:17 2006