Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,744,031 – 2,744,123 |
Length | 92 |
Max. P | 0.884641 |
Location | 2,744,031 – 2,744,123 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 82.55 |
Mean single sequence MFE | -24.68 |
Consensus MFE | -18.26 |
Energy contribution | -18.78 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.13 |
Mean z-score | -2.04 |
Structure conservation index | 0.74 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2744031 92 + 22224390 CCAGUUUAACUUUGACUGAAGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGCCUUCUUCAACUUGUUGAGGCACCCAUUCUUGGUCUUACU .........(((..(((((((((.(((..((((((....)..)))))..))).).))))))....))..)))...(((....)))....... ( -24.10) >DroSec_CAF1 132202 69 + 1 CCAGUUUAACUUUGACUGAAGAGUCAGUCAUGCCGGAAACUUGGAGUAGCUGCCUUCUUCAACUUGUUG----------------------- .(((((..(((((((((((....)))))).....(....)..)))))))))).................----------------------- ( -15.00) >DroSim_CAF1 118965 88 + 1 CCAGUUUAACUUUGACUGAAGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGCCUUCUUCAACUUGUUGAGGCACCCAUUCC----CUGGCU ((((........(((((((....)))))))....(....)..(((((.(.((((((...(.....)..)))))).).)))))----)))).. ( -25.80) >DroEre_CAF1 147360 82 + 1 CCAGUUUAACUUUGACUGGCGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGGCUUCUUCAACUUGUUGAGGCGCCCAUUCC---------- ..((((.......))))((((((((((..((((((....)..)))))..)))))).((((((....))))))))))......---------- ( -28.10) >DroYak_CAF1 141534 87 + 1 CCAGCUUAACUUAGGCUGAAGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGCCAUCAUCAACUUGUUGAGGCAGCCAUUCC-----UGAUU .(((((((...)))))))...(((((........(....)..(((((.((((((.(((.(.....).))))))))).)))))-----))))) ( -30.40) >consensus CCAGUUUAACUUUGACUGAAGAGUCAGUCAUUCCGGAAACUUGGAGUAGCUGCCUUCUUCAACUUGUUGAGGCACCCAUUCC_____U___U .(((((.......((((((....))))))((((((....)..))))))))))....((((((....)))))).................... (-18.26 = -18.78 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:16 2006