Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,741,575 – 2,741,680 |
Length | 105 |
Max. P | 0.656583 |
Location | 2,741,575 – 2,741,680 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 85.49 |
Mean single sequence MFE | -39.42 |
Consensus MFE | -29.18 |
Energy contribution | -30.65 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.10 |
Mean z-score | -2.60 |
Structure conservation index | 0.74 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2741575 105 + 22224390 UUCUUUGCCGAUU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCACCCCGCUUCUUCCGGCGGCUCAACUCGGCACAUUGUUGCAGCAGCUUGGCG ......(((((..---------......((((....((((((.....))))))((((((..(.....)..))))))))))(((((((..........)))).)))...))))). ( -38.20) >DroSec_CAF1 129683 105 + 1 UUCUUCGCCGACU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCGCCCCGCUUCUUCCGGCGGCUCAACUCGGCACAUUGUUGCAGCAGUUUGGCG .....((((((((---------......((((....((((((.....))))))((((((..((...))..))))))))))(((((((..........)))).))))).)))))) ( -40.00) >DroSim_CAF1 116498 105 + 1 UUCUUCGCCGACU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCGCCCCGCUUCUUCCGGCGGCUCAACUCGGCACAUUGUUGCAGCAGCUUGGCG .....((((((((---------......((((....((((((.....))))))((((((..((...))..))))))))))(((((((..........)))).))))).)))))) ( -40.00) >DroEre_CAF1 144886 105 + 1 UUCUUCGCCGAUU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAGGAUCCACCUCGCUUCUUCCUGCGGCUCAGCUCGGCACACUGCUGCAGCAGCUUGGCG .....((((((..---------.......(((....((((((.....))))))((((((..(.....)..))))))...)))...(((((((.....)))).)))...)))))) ( -38.50) >DroYak_CAF1 139068 105 + 1 UUCUUCGCCGACU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCACCUCGCUUCUUCCGGCGGCUCAGCUCGGCACAUUGUUCCAGCAGCUUGGCA ......(((((..---------......((((....((((((.....))))))((((((..(.....)..))))))))))(((..(((.((.((...)).))))))))))))). ( -37.80) >DroPer_CAF1 215799 108 + 1 UUCCUGCCCGACUUGGAGGACUUUCCCUCGCCGCUGUCCU---CCUCGG---AGGAGGAUCCGCCGCGCUUCUUGCGUCUGCUCAGCUCGGCGCACUGCUGCAGCAGCUUCUCG .((((.(((((...(((((((..............)))))---))))))---.).))))..(((((.(((....((....))..))).)))))..((((....))))....... ( -42.04) >consensus UUCUUCGCCGACU_________UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCACCCCGCUUCUUCCGGCGGCUCAACUCGGCACAUUGUUGCAGCAGCUUGGCG ......(((((.................((((....((((((.....))))))((((((..(.....)..))))))))))(((((((..........)))).)))...))))). (-29.18 = -30.65 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:15 2006