Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,739,679 – 2,739,773 |
Length | 94 |
Max. P | 0.885002 |
Location | 2,739,679 – 2,739,773 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 84.61 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -23.97 |
Energy contribution | -24.13 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.06 |
Mean z-score | -2.30 |
Structure conservation index | 0.78 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2739679 94 + 22224390 GCAAGGAAAACAGGGCAAAAAAAUUUACCGCUCACCAGCGAGAGGUCGCUGGAAAGGGCCGUGGCCCAAAUCAGGACCAGGAUCAUCCCGAAUC ....((......((((.............)))).(((((((....)))))))...((((....)))).........)).((......))..... ( -27.82) >DroPse_CAF1 193522 94 + 1 CGGGGGCUAGGAUUAAAAAAAAAUUUACCGCUCACCAGCGAGAGGUCGCUGGAAAGGGCGAUGGCCCAAACCAGGACCAGGAUCGUCCAGAAUC .(((((((((((((.......)))))..(((((.(((((((....)))))))...))))).))))))...)).((((.......))))...... ( -33.30) >DroEre_CAF1 143116 94 + 1 ACUAGCAAAACAGGGCAAAAAAAUUUACCGCUCACCAGCGUGAGGUCGCUGGAAAGGGCCGUGGCCCAAAACAGGACCAGGAUCAUCCCGAAUC ............(((.........((((.(((....)))))))((((.(((....((((....))))....)))))))........)))..... ( -27.60) >DroYak_CAF1 137243 94 + 1 ACAAGCAAACCAGAGCAAAAAAAUUUACCGCUCACCAGCGCGAGGUCGCUGGAAAGGGCCGUGGCCCAAAUCAGGACCAGGAUCAUCCCGAAUC .........((.((((.............)))).((((((......))))))...((((....))))......))....((......))..... ( -26.82) >DroAna_CAF1 223395 94 + 1 UUGGGGAAGUGUUGGUAAAAAAAUUUACCGCUCACCAGCGAGAGGUCACUGGUAAAGGCCAUGGCCCCGACCAGGACCAGGAUCAUCCCGAAUC ((((((..(((.(((((((....)))))))..)))........((((.(((((...(((....)))...))))))))).......))))))... ( -36.40) >DroPer_CAF1 213998 94 + 1 CGGGGGCAAGGAUUAAAAAAAAAUUUACCGCUCACCAGCGAGAGGUCGCUGGAAAGGGCGAUGGCCCAGACCAGGACCAGGAUCGUCCAGAAUC .((((((..(((((.......)))))..(((((.(((((((....)))))))...)))))...))))...)).((((.......))))...... ( -31.30) >consensus ACGAGGAAAACAGGGCAAAAAAAUUUACCGCUCACCAGCGAGAGGUCGCUGGAAAGGGCCAUGGCCCAAACCAGGACCAGGAUCAUCCCGAAUC ............................((((....))))...((((.((((...((((....))))...)))))))).((.....))...... (-23.97 = -24.13 + 0.17)
Location | 2,739,679 – 2,739,773 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 84.61 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -27.79 |
Energy contribution | -27.52 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -2.28 |
Structure conservation index | 0.84 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.885002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2739679 94 - 22224390 GAUUCGGGAUGAUCCUGGUCCUGAUUUGGGCCACGGCCCUUUCCAGCGACCUCUCGCUGGUGAGCGGUAAAUUUUUUUGCCCUGUUUUCCUUGC ...(((((((.......)))))))...((((....))))...(((((((....)))))))..((.((((((....))))))))........... ( -33.50) >DroPse_CAF1 193522 94 - 1 GAUUCUGGACGAUCCUGGUCCUGGUUUGGGCCAUCGCCCUUUCCAGCGACCUCUCGCUGGUGAGCGGUAAAUUUUUUUUUAAUCCUAGCCCCCG ......((..((....((((((((...((((....))))...)))).))))..))(((((.((....((((......)))).)))))))..)). ( -30.70) >DroEre_CAF1 143116 94 - 1 GAUUCGGGAUGAUCCUGGUCCUGUUUUGGGCCACGGCCCUUUCCAGCGACCUCACGCUGGUGAGCGGUAAAUUUUUUUGCCCUGUUUUGCUAGU .....(((.....)))(((((((....((((....))))....))).))))....(((((..((.((((((....))))))....))..))))) ( -33.00) >DroYak_CAF1 137243 94 - 1 GAUUCGGGAUGAUCCUGGUCCUGAUUUGGGCCACGGCCCUUUCCAGCGACCUCGCGCUGGUGAGCGGUAAAUUUUUUUGCUCUGGUUUGCUUGU ...(((((((.......)))))))...((((....))))...((((((......)))))).((((((.........))))))............ ( -31.80) >DroAna_CAF1 223395 94 - 1 GAUUCGGGAUGAUCCUGGUCCUGGUCGGGGCCAUGGCCUUUACCAGUGACCUCUCGCUGGUGAGCGGUAAAUUUUUUUACCAACACUUCCCCAA .....((((.(.....(((((((((..((((....))))..))))).))))....(((....)))((((((....))))))....).))))... ( -38.00) >DroPer_CAF1 213998 94 - 1 GAUUCUGGACGAUCCUGGUCCUGGUCUGGGCCAUCGCCCUUUCCAGCGACCUCUCGCUGGUGAGCGGUAAAUUUUUUUUUAAUCCUUGCCCCCG ......((.(((....((((((((...((((....))))...)))).))))..)))..((..((.((((((......))).)))))..)).)). ( -31.60) >consensus GAUUCGGGAUGAUCCUGGUCCUGGUUUGGGCCACGGCCCUUUCCAGCGACCUCUCGCUGGUGAGCGGUAAAUUUUUUUGCCAUCCUUUCCCCGG ......((.....))((((((......))))))..((((((.((((((......)))))).))).))).......................... (-27.79 = -27.52 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:14 2006