Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,733,832 – 2,733,933 |
Length | 101 |
Max. P | 0.580590 |
Location | 2,733,832 – 2,733,933 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 96.70 |
Mean single sequence MFE | -14.93 |
Consensus MFE | -13.80 |
Energy contribution | -13.80 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.92 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2733832 101 - 22224390 AAUUCGCUAAAAUCGCCUUAUGGCCUUACAUUUUUAACCCACCGAAGUCCAAGCUUCUCCACCCACAUUUUCCAUUUCAUGCACUGUACAGUGAUUUCUCU ...(((((......(((....)))...................(((((....)))))................................)))))....... ( -12.80) >DroSec_CAF1 122099 101 - 1 AAUUCGCUAAAAUCGCCUUAUGGCCUUACAUUUUUAACCCACCGAAGUCCAGGCUUCUCCACCCACAUUUUCCAUUUCUUGCUCGGUACAGUGAUUUCUCC ...(((((......(((....)))................((((((((....)))))...............((.....))...)))..)))))....... ( -16.00) >DroSim_CAF1 110298 101 - 1 AAUUCGCUAAAAUCGCCUUAUGGCCUUACAUUUUUAACCCACCGAAGUCCAGGCUUCUCCACCCACAUUUUCCAUUUCUUGCUCGGUACAGUGAUUUCUCC ...(((((......(((....)))................((((((((....)))))...............((.....))...)))..)))))....... ( -16.00) >consensus AAUUCGCUAAAAUCGCCUUAUGGCCUUACAUUUUUAACCCACCGAAGUCCAGGCUUCUCCACCCACAUUUUCCAUUUCUUGCUCGGUACAGUGAUUUCUCC ...(((((......(((....)))...................(((((....)))))................................)))))....... (-13.80 = -13.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:11 2006