Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,722,316 – 2,722,423 |
Length | 107 |
Max. P | 0.874971 |
Location | 2,722,316 – 2,722,423 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -27.93 |
Consensus MFE | -21.50 |
Energy contribution | -22.67 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.77 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2722316 107 - 22224390 CCUUCAUU-CUCUG---CAUCCGGUGGGCGUGGCCA--CGGCUUCUAGGCCAACUUCCAAAAAAAAAAAA-AACACAUUUCAAUUUUCCACAUGGGAAAUG----UCGCGCGCCGAAC ........-.....---....(((((.((((((((.--.........)))))..................-...........(((((((....))))))).----.))).)))))... ( -27.90) >DroSec_CAF1 110919 100 - 1 CCUCCAUU-CUCCG---CAUCCGGUGGGCGUGGCCA--CGGCUUCUAGGCCAACUUCGAAA-------AA-AACACAUUUAAAUUUUCCACAUGGGAAAUG----UCGCGCGCCGAAC ......((-(.(((---(.....))))(((((((..--.((((....))))..........-------..-...........(((((((....))))))))----))))))...))). ( -28.00) >DroSim_CAF1 98981 100 - 1 CCUCCAUU-CUCCG---CAUCCGGUGGGCGUGGCCA--CGGCUUCUAGGCCAACUUCGAAA-------AA-AACACAUUUCAAUUUUCCACAUGGGAAAUG----UCGCGCGCCGAAC ......((-(.(((---(.....))))(((((((..--.((((....))))......((((-------..-......)))).(((((((....))))))))----))))))...))). ( -28.50) >DroEre_CAF1 125421 90 - 1 AC---------------CAUCCGGUGGGCGUGGCCA--CGGCUUCUAGGCCAACUCCGAAA-------AAAAGCACAUUUCAAUUUUCCACAUGGGAAAUG----UCGCGCGCCGAAC ..---------------....(((((.((((((((.--.........))))).........-------..............(((((((....))))))).----.))).)))))... ( -27.90) >DroWil_CAF1 184076 110 - 1 CCACCACUGCUCCCAAUUGUGCUGUGGGCAUGGCAAAACGCAUUUCA-ACGCAUUUCUAGC------CAA-AACACAUUUCAAUUUUCCACAUGGGAAAUGCCUGCCGAGCGCCGAAC ...((((.((.(......).)).))))((.(((((....(((((((.-..((.......))------...-................((....))))))))).))))).))....... ( -27.20) >DroYak_CAF1 119919 88 - 1 AC---------------CAUCCGGUGGGCGUGGCCA--CGGCUUCUAGGCCAACUCCGAAA-------AAA--CACAUUUCAAUUUUCCACAUGGGAAAUG----UCGCGCGCCGAAC ..---------------....(((((.((((((((.--.........))))).....((((-------...--....)))).(((((((....))))))).----.))).)))))... ( -28.10) >consensus CCUCCAUU_CUCCG___CAUCCGGUGGGCGUGGCCA__CGGCUUCUAGGCCAACUUCGAAA_______AA_AACACAUUUCAAUUUUCCACAUGGGAAAUG____UCGCGCGCCGAAC .....................(((((.((((((((............)))))..............................(((((((....)))))))......))).)))))... (-21.50 = -22.67 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:09 2006