Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,722,078 – 2,722,187 |
Length | 109 |
Max. P | 0.894790 |
Location | 2,722,078 – 2,722,187 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 95.05 |
Mean single sequence MFE | -24.74 |
Consensus MFE | -20.52 |
Energy contribution | -20.60 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.77 |
Structure conservation index | 0.83 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2722078 109 - 22224390 GCGUGGCAACAGGCAACGUUGACAGCAAAAAAUGAAAACAAGUGCAUGCCGUUGAAGAUGAGCAAAUUUCAUCAGAUAAUUGCGAAUAACAAAUGCGCUGAAGAACAGA ((.((....)).))...(((..((........))..))).(((((((((.((((..((((((.....))))))...)))).))(.....)..))))))).......... ( -23.10) >DroSec_CAF1 110681 109 - 1 GCGUGGCAACAGGCAACGUUGACAGCAUAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGAGCAAAUUUCAUCAGAUAAUUGCGAAUAACAAAUGCGCUGAAGAACAGA ((.((....)).))...(((..((((............((......))(((((....((..((((...((....))...))))..))....)))))))))...)))... ( -23.80) >DroSim_CAF1 98742 109 - 1 GCGUGGCAACAGGCAACGUUGACAGCAAAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGAGCAAAUUUCAUCAGAUAAUUGCGAAUAACAAAUGCGCUGAAGAACAGA ((.((....)).))...(((..((((............((......))(((((....((..((((...((....))...))))..))....)))))))))...)))... ( -23.80) >DroEre_CAF1 125188 109 - 1 GCGUGGCAACGGGCAACGUUGACAGCAAAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGCGCAAAUUUCAUCAGCUAAUUGCGAAUUACAAAUGCGCUGAAGAACACA ((.((.(((((.....))))).))))..............(((((((.((((.......))))...........((.....)).........))))))).......... ( -25.10) >DroYak_CAF1 119690 109 - 1 GCGUGGCAACAGGCAACGUUGACAGCAAAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGCGCAAAUUUCAUAAGAUAAUUGCGAAUUACAAAUGCGCUGAAGAGCGCG ((((..((((.(....))))).((((............((......))(((((...(((.(((((...((....))...))))).)))...)))))))))....)))). ( -27.90) >consensus GCGUGGCAACAGGCAACGUUGACAGCAAAAAAUAAAAACAAGUGCAUGGCGUUGAAGAUGAGCAAAUUUCAUCAGAUAAUUGCGAAUAACAAAUGCGCUGAAGAACAGA ((.((....)).))...(((..((((............((......))(((((....((..((((...((....))...))))..))....)))))))))...)))... (-20.52 = -20.60 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:08 2006