Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,720,461 – 2,720,566 |
Length | 105 |
Max. P | 0.998272 |
Location | 2,720,461 – 2,720,566 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 91.86 |
Mean single sequence MFE | -14.18 |
Consensus MFE | -11.40 |
Energy contribution | -11.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.25 |
Structure conservation index | 0.80 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2720461 105 + 22224390 AUAUAAAGCAAAUAUCAAUUACAGUUCUCUUUGUUUCGUCUUUUGCUGCCUUUUAUUCCUCUGGUUUUUUGCCCCUCCGGAAUUU----CCC---AUUUUUUCACUUGCUCC ......((((((........((((......)))).......)))))).......(((((...(((.....))).....)))))..----...---................. ( -12.26) >DroSec_CAF1 109136 102 + 1 ACAUAAAGCAAAUAUCAAUUACAGUUCUCUUUGUUUCGUCUUUUGCUGCCUUUUAUUCCUCUGGGUUUU---CCCUCCGGAAUUU----CCC---AUUUUUUCACUUGCUCC ......((((((........((((......)))).......))))))..............((((..((---((....))))...----)))---)................ ( -16.26) >DroSim_CAF1 97182 102 + 1 ACAUAAAGCAAAUAUCAAUUACAGUUCUCUUUGUUUCGUCUUUUGCUGCCUUUUAUUCCUCUGGUUUUU---CCCUCCGGAAUUU----CCC---AUUUUUUCACUUGCUCC ......((((((........((((......)))).......)))))).......(((((...((.....---.))...)))))..----...---................. ( -12.16) >DroEre_CAF1 123558 109 + 1 ACAUAAAGCAAAUAUCAAUUACAGUUCUCUUUGUUUCGUCUUUUGCUGCCUUUUAUUCCUCUGGUUUUU---CCCACCGGAAUUUCAAUCCGGCCUUUUUUUCACUUACUCC ......((((((........((((......)))).......))))))(((....(((((..(((.....---.)))..)))))........))).................. ( -16.76) >DroYak_CAF1 118153 105 + 1 ACAUAAAGCAAAUAUCAAUUACAGUUCUCUUUGUUUCGUCUUUUGCUGCCUUUUAUUCCUCUGGCUUUU---CCCACCGGAAUUC----CCCACUUUUUUCUCACUUGCUCC ......((((((........((((......)))).......)))))).......(((((..(((.....---.)))..)))))..----....................... ( -13.46) >consensus ACAUAAAGCAAAUAUCAAUUACAGUUCUCUUUGUUUCGUCUUUUGCUGCCUUUUAUUCCUCUGGUUUUU___CCCUCCGGAAUUU____CCC___AUUUUUUCACUUGCUCC ......((((((........((((......)))).......))))))............(((((............)))))............................... (-11.40 = -11.40 + 0.00)
Location | 2,720,461 – 2,720,566 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 91.86 |
Mean single sequence MFE | -19.52 |
Consensus MFE | -16.86 |
Energy contribution | -16.70 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.41 |
Structure conservation index | 0.86 |
SVM decision value | 3.05 |
SVM RNA-class probability | 0.998272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2720461 105 - 22224390 GGAGCAAGUGAAAAAAU---GGG----AAAUUCCGGAGGGGCAAAAAACCAGAGGAAUAAAAGGCAGCAAAAGACGAAACAAAGAGAACUGUAAUUGAUAUUUGCUUUAUAU ((((((((((.......---...----..(((((....((........))...))))).....((((.....................))))......)))))))))).... ( -18.40) >DroSec_CAF1 109136 102 - 1 GGAGCAAGUGAAAAAAU---GGG----AAAUUCCGGAGGG---AAAACCCAGAGGAAUAAAAGGCAGCAAAAGACGAAACAAAGAGAACUGUAAUUGAUAUUUGCUUUAUGU ((((((((((.......---...----..(((((...(((---....)))...))))).....((((.....................))))......)))))))))).... ( -20.00) >DroSim_CAF1 97182 102 - 1 GGAGCAAGUGAAAAAAU---GGG----AAAUUCCGGAGGG---AAAAACCAGAGGAAUAAAAGGCAGCAAAAGACGAAACAAAGAGAACUGUAAUUGAUAUUUGCUUUAUGU ((((((((((.......---...----..(((((...((.---.....))...))))).....((((.....................))))......)))))))))).... ( -18.20) >DroEre_CAF1 123558 109 - 1 GGAGUAAGUGAAAAAAAGGCCGGAUUGAAAUUCCGGUGGG---AAAAACCAGAGGAAUAAAAGGCAGCAAAAGACGAAACAAAGAGAACUGUAAUUGAUAUUUGCUUUAUGU ((((((((((........(((........(((((..(((.---.....)))..)))))....))).............(((........)))......)))))))))).... ( -21.10) >DroYak_CAF1 118153 105 - 1 GGAGCAAGUGAGAAAAAAGUGGG----GAAUUCCGGUGGG---AAAAGCCAGAGGAAUAAAAGGCAGCAAAAGACGAAACAAAGAGAACUGUAAUUGAUAUUUGCUUUAUGU ((((((((((.............----..(((((..(((.---.....)))..))))).....((((.....................))))......)))))))))).... ( -19.90) >consensus GGAGCAAGUGAAAAAAU___GGG____AAAUUCCGGAGGG___AAAAACCAGAGGAAUAAAAGGCAGCAAAAGACGAAACAAAGAGAACUGUAAUUGAUAUUUGCUUUAUGU ((((((((((...................(((((...((.........))...))))).....((((.....................))))......)))))))))).... (-16.86 = -16.70 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:03 2006