Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,700,929 – 2,701,029 |
Length | 100 |
Max. P | 0.590674 |
Location | 2,700,929 – 2,701,029 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -18.42 |
Energy contribution | -19.10 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -1.60 |
Structure conservation index | 0.76 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2700929 100 - 22224390 UUUC---AAAUGCAAAUUACUGCAAAUUGAAUACACGCCGACUGCAGGAGCGCUUGCUGACAUUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCC .(((---((.((((......))))..))))).....((((((.(((((....)))))........((((((.....(((((....))))))))))))))))). ( -25.80) >DroSec_CAF1 97262 100 - 1 UUUC---AAAUGCAAAUUACUGCAAAUUGAAUACACGCCGACUGCAGGAGCGCUUGCUGACAGUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCC .(((---((.((((......))))..))))).....((((((.(((((....)))))........((((((.....(((((....))))))))))))))))). ( -25.80) >DroSim_CAF1 85616 100 - 1 UUUC---AAAUGCAAAUUACUGCAAAUUGAAUACACGCCGACUGCAGGAGCGCUUGCUGACAGUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCC .(((---((.((((......))))..))))).....((((((.(((((....)))))........((((((.....(((((....))))))))))))))))). ( -25.80) >DroEre_CAF1 111178 103 - 1 UUUCUUUAAAUGCAAAUUACUACAAAUUGAAUGCAAGCCGAGUGUAGCAGCACUUGCUGGCAUUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCG ...........((..............(((((((.(((.((((((....))))))))).))))).))((((((..((((((....))))))...)))))))). ( -23.80) >DroYak_CAF1 105883 100 - 1 UUUC---GAAUGAAAAUUGCUACAAAUUGAAUACACGCCAACUGCAGGAGCACUUGCCGACAUUACUUAAUUAAUUUGCGACUCAUUGCAAUUAUGGUUGGCC ....---.............................((((((((((((....)))))..................((((((....))))))....))))))). ( -19.30) >consensus UUUC___AAAUGCAAAUUACUGCAAAUUGAAUACACGCCGACUGCAGGAGCGCUUGCUGACAUUACAUAAUUAAUUUGCGACUUAUUGCAAUUAUGGUUGGCC ..........((((......))))............((((((.(((((....)))))........((((((.....(((((....))))))))))))))))). (-18.42 = -19.10 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:02 2006