Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,695,578 – 2,695,671 |
Length | 93 |
Max. P | 0.993424 |
Location | 2,695,578 – 2,695,671 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 94.41 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -17.20 |
Energy contribution | -17.36 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.14 |
Mean z-score | -1.84 |
Structure conservation index | 0.79 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2695578 93 + 22224390 GGCCACUUAAAAAAUCAUAAUCAUAACCAAUUAUGAUUACGCCAGGCAACCGAGCCAUAAGCCAGAUGAGCCAAGCUGCCAGCUUUGGCCUUG (((((.......(((((((((........)))))))))..((..((((.(...(((((.......))).))...).)))).))..)))))... ( -24.20) >DroSec_CAF1 92113 93 + 1 GGCCACUUAAAAAAUCAUAAUCAUAACCAAUUAUGAUUACGCCAGGCAACCGAGCCAUAAGCCAGAUGAGCCAAGCUGCCAGCUUUGGCCUUG (((((.......(((((((((........)))))))))..((..((((.(...(((((.......))).))...).)))).))..)))))... ( -24.20) >DroSim_CAF1 80462 93 + 1 GGCCACUUAAAAAAUCAUAAUCAUAACCAAUUAUGAUUACGCCAGGCAACCGAGCCAUAAGCCAGAUGAGCCAAGCUGCCAGCUUUGGCCUUG (((((.......(((((((((........)))))))))..((..((((.(...(((((.......))).))...).)))).))..)))))... ( -24.20) >DroEre_CAF1 105959 92 + 1 GGCCACUUAAAAAAUCAUAAUCAUAACCAAUUAUGAUUACGCCAAGCAACCGAGUCAUAAGCCAGAUGAGCCGUACUACCAGCUUUGGACC-G (((((.......(((((((((........)))))))))..((........((..((((.......))))..))........))..))).))-. ( -15.09) >DroYak_CAF1 100650 92 + 1 GGGCACUUAAAAAAUCAUAAUC-UAACCAAUUAUGAUUACGCCAGGCAACCGAGUCAUAAGCCAGAUGAGCCAAACUGCCAGCUUUGGCUUUG .(((........(((((((((.-......)))))))))......(((......)))....)))....((((((((........)))))))).. ( -21.80) >consensus GGCCACUUAAAAAAUCAUAAUCAUAACCAAUUAUGAUUACGCCAGGCAACCGAGCCAUAAGCCAGAUGAGCCAAGCUGCCAGCUUUGGCCUUG (((.........(((((((((........)))))))))......(((......)))....)))......(((((((.....).)))))).... (-17.20 = -17.36 + 0.16)
Location | 2,695,578 – 2,695,671 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.41 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -25.74 |
Energy contribution | -25.94 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.13 |
Mean z-score | -2.98 |
Structure conservation index | 0.80 |
SVM decision value | 2.40 |
SVM RNA-class probability | 0.993424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2695578 93 - 22224390 CAAGGCCAAAGCUGGCAGCUUGGCUCAUCUGGCUUAUGGCUCGGUUGCCUGGCGUAAUCAUAAUUGGUUAUGAUUAUGAUUUUUUAAGUGGCC ...(((((..((((((((((.(((.(((.......)))))).))))))).)))((((((((((....))))))))))...........))))) ( -35.80) >DroSec_CAF1 92113 93 - 1 CAAGGCCAAAGCUGGCAGCUUGGCUCAUCUGGCUUAUGGCUCGGUUGCCUGGCGUAAUCAUAAUUGGUUAUGAUUAUGAUUUUUUAAGUGGCC ...(((((..((((((((((.(((.(((.......)))))).))))))).)))((((((((((....))))))))))...........))))) ( -35.80) >DroSim_CAF1 80462 93 - 1 CAAGGCCAAAGCUGGCAGCUUGGCUCAUCUGGCUUAUGGCUCGGUUGCCUGGCGUAAUCAUAAUUGGUUAUGAUUAUGAUUUUUUAAGUGGCC ...(((((..((((((((((.(((.(((.......)))))).))))))).)))((((((((((....))))))))))...........))))) ( -35.80) >DroEre_CAF1 105959 92 - 1 C-GGUCCAAAGCUGGUAGUACGGCUCAUCUGGCUUAUGACUCGGUUGCUUGGCGUAAUCAUAAUUGGUUAUGAUUAUGAUUUUUUAAGUGGCC .-((((..((((..(.((.....))...)..))))..)))).(((..(((((...((((((((((......))))))))))..)))))..))) ( -29.50) >DroYak_CAF1 100650 92 - 1 CAAAGCCAAAGCUGGCAGUUUGGCUCAUCUGGCUUAUGACUCGGUUGCCUGGCGUAAUCAUAAUUGGUUA-GAUUAUGAUUUUUUAAGUGCCC ....((((.(((((..((((.((((.....))))...)))))))))...))))..((((((((((.....-))))))))))............ ( -23.10) >consensus CAAGGCCAAAGCUGGCAGCUUGGCUCAUCUGGCUUAUGGCUCGGUUGCCUGGCGUAAUCAUAAUUGGUUAUGAUUAUGAUUUUUUAAGUGGCC ...(((((..((((((((((.((.((((.......)))))).))))))).)))((((((((((....))))))))))...........))))) (-25.74 = -25.94 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:01 2006