Locus 953

Sequence ID X_DroMel_CAF1
Location 2,690,018 – 2,690,117
Length 99
Max. P 0.990235
window1548

overview

Window 8

Location 2,690,018 – 2,690,117
Length 99
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 66.18
Mean single sequence MFE -20.30
Consensus MFE -11.17
Energy contribution -11.53
Covariance contribution 0.36
Combinations/Pair 1.18
Mean z-score -2.31
Structure conservation index 0.55
SVM decision value 2.20
SVM RNA-class probability 0.990235
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2690018 99 + 22224390
CUAUCUUUU---CCGCCGAAUUUUCCCUUCU-GCGAGACUCCCAAACCAACU--GCU--------CUUCGCAUUCUCUGGCAGCGAAAUCAUUUUUGUUGCCAUUUCCAUGGG
........(---((((.(((.......))).-))).))..((((.......(--((.--------....))).....(((((((((((....)))))))))))......)))) ( -25.70)
>DroPse_CAF1 131908 98 + 1
CUAUCUC----ACUCUGGAGCACUCCU-CUU-A------ACCCGGUCCAUCCUUAGCCUUUCAGAUUUCACAUUCUUUGGCAGAAAAAUAAUUUUGGCUGCUAUUUUUUU---
.......----..(((((((.....))-)..-.------....(((.........)))...))))............((((((..(((....)))..)))))).......--- ( -14.10)
>DroSec_CAF1 86710 98 + 1
CUAUCUUUU---CCCCCGAAUUCUCCC-UCU-GCGAGACACCCAGACCAACU--GCU--------CUUCGCAUUCUCUGGCAGCGAAAUCAUUUUUGUUGCCAUUUCCAUGGG
.........---..((((.........-..(-((((((....(((.....))--).)--------).))))).....(((((((((((....)))))))))))......)))) ( -25.40)
>DroEre_CAF1 100475 104 + 1
CCAUCUAUCUUACCCCCGAAUUUUCCC-UUUGGCGAGACACCCAGACCAACUGUGCU--------CUUCACAUUCCUUGGCAGCGAAAUCAUUUUUGUUGCCAUUUCGUUGGG
.......((((....(((((.......-))))).))))........(((((((((..--------...)))).....(((((((((((....)))))))))))....))))). ( -26.40)
>DroYak_CAF1 94401 92 + 1
CUAUCUUUCC--CCCUCGAAUUUUCCC-CUU-GCGAGACUCCCAGACCAACU-----------------ACAUUUUCUGGCAGCGAACUAAUUUUUGUUGCUAUUUCCUUGGA
.......(((--..((((.........-...-.))))...............-----------------........((((((((((......)))))))))).......))) ( -14.72)
>DroPer_CAF1 150723 98 + 1
CUAUCUC----ACUCUGGAGCACUCCU-CUU-A------ACCCGGUCCAUCCUUAGCCUUCCAGAUUUCACAUUCUUUGGCAGAAAAAUAAUUUUGGCUGCUAUUUUUUU---
.......----..(((((((.......-...-.------....(((.........))))))))))............((((((..(((....)))..)))))).......--- ( -15.46)
>consensus
CUAUCUUU____CCCCCGAAUUCUCCC_CUU_GCGAGACACCCAGACCAACU__GCU________CUUCACAUUCUCUGGCAGCGAAAUAAUUUUUGUUGCCAUUUCCUUGGG
.............................................................................(((((((((((....))))))))))).......... (-11.17 = -11.53 +   0.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:59 2006