Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,672,792 – 2,672,884 |
Length | 92 |
Max. P | 0.599425 |
Location | 2,672,792 – 2,672,884 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 87.19 |
Mean single sequence MFE | -22.77 |
Consensus MFE | -19.35 |
Energy contribution | -19.74 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.08 |
Mean z-score | -1.62 |
Structure conservation index | 0.85 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599425 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2672792 92 + 22224390 AUUUCUUA--UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUUUCCCC--------C ........--...(((....(((((((.(((.((.((((.......(((((((......))))))))))))).))).).))))))....))).--------. ( -23.71) >DroPse_CAF1 120070 101 + 1 AUAUCUUCUUUUUGGGUAUCCUGGUGCCCUGAGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUGUCCCCCU-CCUCAU .............((((((....)))))).(((..(((.......((((((((......))))))))(((((.....).))))....)))...))-)..... ( -23.20) >DroSim_CAF1 74102 100 + 1 AUUUCUUA--UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUGUCCUCCGACCCCCC ........--.(((((....(((((((.(((.((.((((.......(((((((......))))))))))))).))).).))))))......)))))...... ( -23.21) >DroEre_CAF1 89870 92 + 1 AUUUCAUA--UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUUUCCCUC-------- ........--...(((....(((((((.(((.((.((((.......(((((((......))))))))))))).))).).))))))....)))..-------- ( -24.11) >DroYak_CAF1 85871 93 + 1 AUUCCUUA--UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCUCAUAAUGCCGACAGCUGUCCUCCG------- ........--...((..(..((((((((...))).((((.......(((((((......)))))))))))..........))))).)..))....------- ( -19.21) >DroPer_CAF1 137679 101 + 1 AUAUCUUCUUUUUGGGUAUCCUGGUGCCCUGAGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUGUCCCCCU-CCUCAU .............((((((....)))))).(((..(((.......((((((((......))))))))(((((.....).))))....)))...))-)..... ( -23.20) >consensus AUUUCUUA__UUCGGGUAUCCUGUCGCCUUGGGCCGACUUUUUAAUUGCAUUAACACGCUAAUGUAAGUCGCAUAAUGCCGACAGCUGUCCCCC________ .............(((....(((((((.(((.((.((((.......(((((((......))))))))))))).))).).))))))....))).......... (-19.35 = -19.74 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:57 2006