Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,670,590 – 2,670,696 |
Length | 106 |
Max. P | 0.557048 |
Location | 2,670,590 – 2,670,696 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -16.67 |
Consensus MFE | -15.54 |
Energy contribution | -15.43 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -0.91 |
Structure conservation index | 0.93 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2670590 106 + 22224390 AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU ..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........))).....--......... ( -16.90) >DroSec_CAF1 76616 106 + 1 AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU ..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........))).....--......... ( -16.90) >DroSim_CAF1 71994 106 + 1 AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU ..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........))).....--......... ( -16.90) >DroEre_CAF1 87586 106 + 1 AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUGUGCAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU .((((...))))........((..((((((((............)))))))).))(((((......((((.....(((((....)))))))))....--..))))).. ( -19.80) >DroYak_CAF1 83536 106 + 1 AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC--UCGUUACGU ..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........))).....--......... ( -16.90) >DroAna_CAF1 115586 99 + 1 AAGGCUUUGCUCAUUUAGCUGGUUAAUUGCAUUUCAUUUAAUUU---------CUGUAAUUUCUUUUGCCUUAUUGACGAUAUUUUGUUGCCAUUUCUCUCGUUACGU (((((...(((.....))).((..(((((((.............---------.))))))).))...)))))..((((((.....((....))......))))))... ( -12.64) >consensus AGGGCUUCGCUCAUUUAGCUAGUUAAUUGCAUUUCAUUUAAUUUCUGUAAUUUCUGUAAUUUCUUUUGGCUUAUUGACGAUAUUUUGUUGCCAUUUC__UCGUUACGU ..(((.(((.(((...((((((..(((((((.......................)))))))....))))))...)))))).........)))................ (-15.54 = -15.43 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:56 2006