Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,667,330 – 2,667,426 |
Length | 96 |
Max. P | 0.622849 |
Location | 2,667,330 – 2,667,426 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 88.04 |
Mean single sequence MFE | -35.55 |
Consensus MFE | -25.76 |
Energy contribution | -26.95 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.12 |
Mean z-score | -1.63 |
Structure conservation index | 0.72 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2667330 96 - 22224390 CA-AAUCUGCAAAGGGGCUGGCCGCUAGGUGGCGCCACACCGGCGACAAAAGCCGUUCAA--AGGGGUCGAAUUUCUUGGCCACCUUGGCCAUCUCAAU ..-..........((((.((((((..(((((((.......((((.......))))....(--((..((...))..))).)))))))))))))))))... ( -36.30) >DroSim_CAF1 67853 94 - 1 CA-AAUCCGCG--GGGGCUGGCCGCUAGGUGGCGCCACACCGGCGACAAAAGCCGUUCAA--AGGGGUCGAAUUUCUUGGCCACCUUGGCCAUCUCAAU ..-........--((((.((((((..(((((((.......((((.......))))....(--((..((...))..))).)))))))))))))))))... ( -36.10) >DroEre_CAF1 84238 95 - 1 CAAAAACUGCG--GGGUCUGGCCGCUAGGUGGCGCCACACCGGGGACAAAAGCCGUUCAAAAAGGGGUCGAAUUGC-UGGCCACCUU-GCCAUCUCAAU ........(((--((((.((((.(((....))))))).)))(....).....)))).....(((((((((......-))))).))))-........... ( -30.10) >DroYak_CAF1 80307 92 - 1 CA-AAUCUGCG--GGGACCGGCCGCUAGGUGGCCGGUCACCGGGGACAAUAACUGUUCAA--AGGGGUCGAAUUGC-UGGCCACCUU-GCCAUCUCAAU ..-..(((.((--(.((((((((((...)))))))))).))).))).............(--((((((((......-))))).))))-........... ( -39.70) >consensus CA_AAUCUGCG__GGGGCUGGCCGCUAGGUGGCGCCACACCGGCGACAAAAGCCGUUCAA__AGGGGUCGAAUUGC_UGGCCACCUU_GCCAUCUCAAU .............((((.((((((..((((((((((.....)))(((.....((.........)).)))..........)))))))))))))))))... (-25.76 = -26.95 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:55 2006