Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,659,778 – 2,659,880 |
Length | 102 |
Max. P | 0.669981 |
Location | 2,659,778 – 2,659,880 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 87.07 |
Mean single sequence MFE | -26.17 |
Consensus MFE | -18.52 |
Energy contribution | -19.28 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.71 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2659778 102 + 22224390 UUUACAGGCACACAUGUGUGUGUUGCUCUUACUGCGAGUAAUAAGUCAAGUCGCUGGCAACUGGCAACUGGAGCAGA-ACACUGGGAAAA-AAUCAUAUUAAAU ((..(((((((((....))))))((((((...(((.(((....(((......)))....))).)))...))))))..-...)))..))..-............. ( -28.20) >DroSec_CAF1 66288 99 + 1 UUUACAGGCA--CAUGUGUGCGUUGCUCUUACUGCGAGUAAUAAGUCAAGUCGCAGGCAACUGACAACUGGAGCAGA-ACACUGAGAAA--AAUCUAAUUAAAA ....((((((--(....)))).((((((((((.....)))........(((.((((....))).).)))))))))).-...))).....--............. ( -23.90) >DroSim_CAF1 60835 99 + 1 UUUACAGGCA--CAUGUGUGCGUUGCUCUUACUGCGAGUAAUAAGUCAAGUCGCAGGCAACUGGCAACUGGAGCAGA-ACACUGAGAAA--AAUCUAAUUAAAA ....((((((--(....)))).(((((((..((((((.(.........).))))))((.....))....))))))).-...))).....--............. ( -26.60) >DroYak_CAF1 72791 93 + 1 UUUACAGGCA--CAUGUGUGUGUUGCUCUUUCUGCGAGUAAUAAGUCAAGUCGCAGGCAACCGGCAACUGGAACCGAAACACUGUGAGAAAAAUC--------- ((((((((((--(....))))((((((...(((((((.(.........).))))))).....)))))).............))))))).......--------- ( -26.00) >consensus UUUACAGGCA__CAUGUGUGCGUUGCUCUUACUGCGAGUAAUAAGUCAAGUCGCAGGCAACUGGCAACUGGAGCAGA_ACACUGAGAAA__AAUCUAAUUAAAA ............((.((((...(((((((..((((((.(.........).))))))......(....).)))))))..)))))).................... (-18.52 = -19.28 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:51 2006