Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,659,305 – 2,659,401 |
Length | 96 |
Max. P | 0.934102 |
Location | 2,659,305 – 2,659,401 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.71 |
Mean single sequence MFE | -35.35 |
Consensus MFE | -28.69 |
Energy contribution | -30.00 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.04 |
Structure conservation index | 0.81 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.934102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2659305 96 - 22224390 ------------------GG--GUAGCGGGAAAAGCGGAAAAGUGGCAAAGGUACGGCAGCAACAGUUGUCCUUUGUCACCAGC---CCCGCGCGCCGAGUUUCGACAUUUCCAAAAAC ------------------.(--((.(((((....((......((((((((((.(((((.......)))))))))))))))..))---)))))..)))...................... ( -33.50) >DroSec_CAF1 65808 96 - 1 ------------------GG--UAAGCGGGAAAAGCGGAAAAGUGGCAAAGGUACGUCAGCAACAGUUGUCCUUUGUCACCAGC---ACCGCGCUCCGAGUUUCGGCUUUUCCAAAACC ------------------((--(.....((((((((.((((.((((((((((.....((((....)))).)))))))))).(((---.....))).....)))).))))))))...))) ( -36.40) >DroEre_CAF1 76124 118 - 1 GAAAAUCGGAGAAAAGCGGGCACAAGCGGGAAAAGCAGAAAAGUGGCAAAGGUACGGCAGCAACAGUUGG-CUUUGUCACCAGCUCCCCCGCGCCCCGAGUUUCGGCUUUUCCAAAAGC ........(.(((((((((((....(((((...(((......(((((((((...((((.......)))).-)))))))))..)))..)))))))))((.....))))))))))...... ( -40.20) >DroYak_CAF1 72283 96 - 1 ------------------GG--CAACCGGGAAAAGCAGAAAAGUGGCAAAGGUACGGCAGCAACAGUUGUCCUUUGUCACCAGC---CCCGCGCUCCGAGUUUUGGCUGUUCCAAAAAC ------------------(.--...)..((((..........((((((((((.(((((.......)))))))))))))))((((---(..((.......))...)))))))))...... ( -31.30) >consensus __________________GG__CAAGCGGGAAAAGCAGAAAAGUGGCAAAGGUACGGCAGCAACAGUUGUCCUUUGUCACCAGC___CCCGCGCUCCGAGUUUCGGCUUUUCCAAAAAC ............................((((((((.((((.((((((((((.(((((.......)))))))))))))))..((......))........)))).))))))))...... (-28.69 = -30.00 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:48 2006