Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,633,035 – 2,633,125 |
Length | 90 |
Max. P | 0.753371 |
Location | 2,633,035 – 2,633,125 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 97.46 |
Mean single sequence MFE | -22.24 |
Consensus MFE | -19.18 |
Energy contribution | -19.38 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.86 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753371 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2633035 90 - 22224390 CACUCAUUUGGGUCCGCC-CCAAUCCAAUGAGGCUCAGCACAACUAACCAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGAAC ..(((..(((((.....)-))))......((((((.((((((....(((......)))......))))))..))))))))).......... ( -24.90) >DroSec_CAF1 40246 90 - 1 CCCUCAUUUGGGUCCGCC-CCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGCAC ..(((..(((((.....)-))))......((((((.(((((((((((......)))))......))))))..))))))))).......... ( -22.20) >DroSim_CAF1 35509 90 - 1 CCCUCAUUUGGGUCCGCC-CCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGCAC ..(((..(((((.....)-))))......((((((.(((((((((((......)))))......))))))..))))))))).......... ( -22.20) >DroEre_CAF1 47842 91 - 1 CCCUCAUUUGGGUCCGCCCCCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGCGUUAAAGCCUUGAGAUAUAUGCAC ..(((..(((((......)))))......((((((..(((..(((((......)))))......))).....))))))))).......... ( -19.70) >DroYak_CAF1 45182 90 - 1 CCCUCAUUUGGGUCCGCC-CCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGUAC ..(((..(((((.....)-))))......((((((.(((((((((((......)))))......))))))..))))))))).......... ( -22.20) >consensus CCCUCAUUUGGGUCCGCC_CCAAUCCAAUGAGGCUCAGCACAACUAACAAGAUUUGGUGAUAAAUGUGUUAAAGCCUUGAGAUAUAUGCAC ..(((..((((((.........)))))).((((((.(((((((((((......)))))......))))))..))))))))).......... (-19.18 = -19.38 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:45 2006