Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,627,670 – 2,627,777 |
Length | 107 |
Max. P | 0.959459 |
Location | 2,627,670 – 2,627,777 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.54 |
Mean single sequence MFE | -33.18 |
Consensus MFE | -26.01 |
Energy contribution | -25.77 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.16 |
Mean z-score | -3.50 |
Structure conservation index | 0.78 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2627670 107 - 22224390 ACCUCUGGCGAAAAAAAAACCCUUUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAACGCCCAAAAA-GACAAGCCA ......((((((((........))))).((((((((((((((..(((..((...........))..)))..)))))))))))))).............-.....))). ( -36.00) >DroVir_CAF1 52089 90 - 1 -----U-----------GGCUCUCUGACUGUGGCGUGUUGAGUGUCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGUUCUACAGAGUGUUCAAAAG-GACAGG-CA -----.-----------.(((......((((((..(((((((..(((..((...........))..)))..)))))))..))))))..(((((....)-))))))-). ( -23.20) >DroPse_CAF1 25738 96 - 1 AUCCUU-----------GCCCCAGUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAGCGCCCAAAAG-GACAGGACA .(((((-----------......(((..((((((((((((((..(((..((...........))..)))..)))))))))))))).)))......)))-))....... ( -35.60) >DroEre_CAF1 37077 106 - 1 ACACUUGGUGGAGA--AACCCCUUUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAACGCCCAAAAAGGACAACCCA ......((((((((--(.....))))).((((((((((((((..(((..((...........))..)))..))))))))))))))...))))......((.....)). ( -36.40) >DroYak_CAF1 38266 104 - 1 ACCCUUGGC-GAUA--AACCCCUUUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAACGCCCAAAAA-GACAACCCA ......(((-(...--.((........))(((((((((((((..(((..((...........))..)))..)))))))))))))....))))......-......... ( -32.30) >DroPer_CAF1 29402 96 - 1 AUCCUU-----------GCCCCAGUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAGCGCCCAAAAG-GACAGGACA .(((((-----------......(((..((((((((((((((..(((..((...........))..)))..)))))))))))))).)))......)))-))....... ( -35.60) >consensus ACCCUU___________ACCCCUUUUCGUGUGGCGUGUUGAGUGCCUAAUAAAAUCAUAAAAUAGCAGGUGUUUAGCGCGCCACAAAACGCCCAAAAA_GACAAGCCA ............................((((((((((((((..(((..((...........))..)))..))))))))))))))....................... (-26.01 = -25.77 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:44 2006