Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,626,879 – 2,626,971 |
Length | 92 |
Max. P | 0.999738 |
Location | 2,626,879 – 2,626,971 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 90.85 |
Mean single sequence MFE | -15.78 |
Consensus MFE | -14.87 |
Energy contribution | -14.92 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -2.90 |
Structure conservation index | 0.94 |
SVM decision value | 3.98 |
SVM RNA-class probability | 0.999738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2626879 92 + 22224390 ACCCCAAAAACCCGAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA-UUAACAGACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-UACU ...........................((((.(((((((((((((..-.............)))))))))......)))))))).....-.... ( -16.16) >DroSec_CAF1 34026 92 + 1 CCCCCAAAAACCCGAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA-UUAACAGACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-UACU ...........................((((.(((((((((((((..-.............)))))))))......)))))))).....-.... ( -16.16) >DroSim_CAF1 31672 94 + 1 CCCCCAAAAACCCGAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAAGUUAACAGACGAACGAAAAAUGUAUGACAUGCCACAUAUGCAGUACU ...................(((.(...((((.(((((((((((((..(((....)))....)))))))))......))))))))..).)))... ( -16.00) >DroEre_CAF1 36230 90 + 1 CCCC--AAAACCCAAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-UACU ....--.....................((((.(((((((((((((..-.............)))))))))......)))))))).....-.... ( -16.16) >DroYak_CAF1 37412 90 + 1 CCCC--AAAACCCAAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-UACU ....--.....................((((.(((((((((((((..-.............)))))))))......)))))))).....-.... ( -16.16) >DroAna_CAF1 48346 89 + 1 ACCACCACCACCCCAUGC---CCCCUUAUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA-CACU ..................---....((((((.(((((((((((((..-.............)))))))))......))))..)))))).-.... ( -14.06) >consensus CCCCCAAAAACCCGAUCCCACUCCCUCGUGUAGGCAACAUUUUUCAA_UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA_UACU ...........................((((.(((((((((((((................)))))))))......)))))))).......... (-14.87 = -14.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:43 2006