Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 376,439 – 376,548 |
Length | 109 |
Max. P | 0.546869 |
Location | 376,439 – 376,548 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 91.01 |
Mean single sequence MFE | -20.37 |
Consensus MFE | -19.55 |
Energy contribution | -20.00 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.26 |
Structure conservation index | 0.96 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 376439 109 - 22224390 UAUGCUGUAAUAUCCUUUAAUUGU------CCCGGGUCACAUUUUUCCGUAUCCCCACGCCCUAAAGCAUUUUCGUAUCCAUUAAUUAAACAAGUAAAGGUGUAGGCUUAUAUUA ...(((...(((.((((((.((((------...(((..((........))..)))...((......)).....................)))).))))))))).)))........ ( -17.50) >DroSec_CAF1 10235 115 - 1 UAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCCCGCCUUUAAGCAUUUUCGUAUACAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAUUA ((((((...(((.((((((((((..........((((.((........))))))....((......))......................))))))))))))).))))))..... ( -21.80) >DroSim_CAF1 9973 115 - 1 UAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCACGCCUUAAAGCAUUUUCGUAUUUAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAUUA ((((((...(((.((((((((((..........((((.((........))))))....((......))......................))))))))))))).))))))..... ( -21.80) >consensus UAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCACGCCUUAAAGCAUUUUCGUAUACAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAUUA ((((((...(((.((((((((((..........(((..((........))..)))...((......))......................))))))))))))).))))))..... (-19.55 = -20.00 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:06 2006