| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,618,084 – 2,618,199 |
| Length | 115 |
| Max. P | 0.689314 |
| Location | 2,618,084 – 2,618,199 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 57.90 |
| Mean single sequence MFE | -26.83 |
| Consensus MFE | -10.28 |
| Energy contribution | -8.07 |
| Covariance contribution | -2.21 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.689314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2618084 115 - 22224390 CGUGAUAAAUGUCACCCAUCAAAUCAAAGUCUUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAACUCCUGCAGCGUCAUGCCCCCGUUGGGGCCAAAACCACCCGGAAAUCC .(((((....))))).............((.((((((...((((.(((((....))))).............(((......)))...))))..)))))).)).....((....)) ( -27.40) >DroPse_CAF1 16164 115 - 1 UCCCCACCGACUGAUCUACGAAAUAUAUCCAUCUAUAUAUUAUGAAUAGAGGAAGCCUACCACGACGCCAUUCUCGGCGUUGACCCAUAUUAGGACUUGUCGUAUCCAAAUUCAU .......((((...(((..........(((.(((((.........)))))))).........(((((((......)))))))..........)))...))))............. ( -23.60) >DroSec_CAF1 26269 111 - 1 CGUGAUAAAUGUCACCCAUCAAAUCAAAGUCUUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAACUCCUGCAACGUCAUGCCCCCGUUGGGGCCAGAACCACCCGGAA---- .(((((....))))).............((..(((((...((((.(((((....))))).............(((......)))...))))..)))))..)).........---- ( -26.40) >DroEre_CAF1 27320 111 - 1 CGUGAUAAAUGUCACCCAUCAAAUCAAAGUCUUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAUCUCCUGCAGCGCCAUGCCCCCA-UGGGGCCAGCACCCC---GAAAACG .(((((....))))).............((.((((((........(((((....)))))...................(((((....))-))))))))).))...---....... ( -25.80) >DroYak_CAF1 27651 112 - 1 CGUGAUAAAUGUCACCCAUCAAAUCAAAGUCUUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAUCUCCUGCAGCGUCAUGCUUCUG-UGGGGCCAGAACCUCUCUGAAAG-- .(((((....)))))........(((.((..((((((........(((((....)))))..(((((......(((......)))...))-))))))))).....)).)))...-- ( -29.50) >DroPer_CAF1 16343 115 - 1 UCCCCACCGACUGAUCUACGAAAUAUAUCCAUCUAUAUAUUAUGAAUAGAGGAAGCUUACCACGACGCCAUUCUCGGCGUUGACCCAUAUUAGGAUUUGUCGUAUCCAAAGUCAU ........((((....(((((.....((((.(((((.........)))))............(((((((......)))))))..........))))...))))).....)))).. ( -28.30) >consensus CGUGAUAAAUGUCACCCAUCAAAUCAAAGUCUUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAACUCCUGCAGCGUCAUGCCCCCAUUGGGGCCAGAACCACCCAGAAAC__ ..............((((.........(((((((((.........)))))).))).................(((......)))......))))..................... (-10.28 = -8.07 + -2.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:41 2006