Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,604,744 – 2,604,844 |
Length | 100 |
Max. P | 0.853638 |
Location | 2,604,744 – 2,604,844 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -20.06 |
Consensus MFE | -19.70 |
Energy contribution | -20.30 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.98 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2604744 100 + 22224390 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUUCUUUA .(((((............((((((((....))..)))))))))))((((.....(((((((.....(((.....)))....))))))).......)))). ( -16.70) >DroSec_CAF1 12798 100 + 1 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCUUUA .(((((............((((((((....))..)))))))))))((((((...(((((((.....(((.....)))....))))))).....)))))). ( -22.60) >DroSim_CAF1 12467 100 + 1 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCUUUA .(((((............((((((((....))..)))))))))))((((((...(((((((.....(((.....)))....))))))).....)))))). ( -22.60) >DroEre_CAF1 13812 100 + 1 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCCUUA .(((((............((((((((....))..)))))))))))...(((...(((((((.....(((.....)))....))))))).....))).... ( -19.20) >DroYak_CAF1 13155 100 + 1 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCCUUA .(((((............((((((((....))..)))))))))))...(((...(((((((.....(((.....)))....))))))).....))).... ( -19.20) >consensus AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCUUUA .(((((............((((((((....))..)))))))))))((((((...(((((((.....(((.....)))....))))))).....)))))). (-19.70 = -20.30 + 0.60)
Location | 2,604,744 – 2,604,844 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -20.66 |
Consensus MFE | -20.32 |
Energy contribution | -20.28 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.40 |
Structure conservation index | 0.98 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2604744 100 - 22224390 UAAAGAAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU .((((....(((.((((((((..(((.....)))...))))))))..))).))))((((((((((...((....)).))))............)))))). ( -17.90) >DroSec_CAF1 12798 100 - 1 UAAAGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU .((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). ( -21.50) >DroSim_CAF1 12467 100 - 1 UAAAGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU .((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). ( -21.50) >DroEre_CAF1 13812 100 - 1 UAAGGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU .((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). ( -21.20) >DroYak_CAF1 13155 100 - 1 UAAGGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU .((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). ( -21.20) >consensus UAAAGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU .((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). (-20.32 = -20.28 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:36 2006