Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,598,871 – 2,598,980 |
Length | 109 |
Max. P | 0.773057 |
Location | 2,598,871 – 2,598,980 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 88.35 |
Mean single sequence MFE | -32.07 |
Consensus MFE | -26.90 |
Energy contribution | -26.98 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.11 |
Mean z-score | -2.02 |
Structure conservation index | 0.84 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.773057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2598871 109 + 22224390 UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAGUACAGCAAAAAUGAGAA .((((((...(((((.(((((............))))))))))(((.(((.....))).)))---))))))..((((...))))((((.........))))........... ( -33.10) >DroSec_CAF1 7031 108 + 1 UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAGUACAGCAAAAAUAAGA- .((((((...(((((.(((((............))))))))))(((.(((.....))).)))---))))))..((((...))))((((.........))))..........- ( -33.10) >DroSim_CAF1 7075 108 + 1 UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAGUACAGCAAAAAUAAGA- .((((((...(((((.(((((............))))))))))(((.(((.....))).)))---))))))..((((...))))((((.........))))..........- ( -33.10) >DroEre_CAF1 7817 108 + 1 UGAACUCCGUGGUUCCACUGUACACGUUUAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAACACAACAAAAAUGAAC- .((((((...(((((.(((((............))))))))))(((.(((.....))).)))---))))))((((((...)))))).........................- ( -31.20) >DroYak_CAF1 7322 108 + 1 UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC---GAGUUCGUGCUCAAUGAGCGCUGGAAUUAAGACAGCAAAAAUGUAC- ........(((....))).(((((.(((((..((((.(((((((((.(((.....))).)))---).)))))))))...)))))((((.........)))).....)))))- ( -34.00) >DroAna_CAF1 8639 110 + 1 CGAACUCCGUGGUUCCACUGUACACAUUAACAAACAGUGAACCAUUUGACGAAGAAUUCGAGUUGGAGCUCGUGCUCAGUGUUCGCUAAAAAAAUCACA-CAGACACAAAA- .((.(((((((((((.(((((............))))))))))))....(((.....)))....)))).))(((.((.((((..............)))-).)))))....- ( -27.94) >consensus UGAACUCCGUGGUUCCACUGUACACGUUCAAAAGCAGUGAACCGUUCGACGACGAGUUCGAC___GAGUUCGUGCUCAAUGAGCGCUGGAAUUAGUACAGCAAAAAUAAAA_ .((((((..((((((.(((((............))))))))))).((((........))))....))))))((((((...)))))).......................... (-26.90 = -26.98 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:30 2006