Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,596,052 – 2,596,169 |
Length | 117 |
Max. P | 0.945543 |
Location | 2,596,052 – 2,596,169 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -35.66 |
Consensus MFE | -21.15 |
Energy contribution | -22.53 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.31 |
Mean z-score | -2.35 |
Structure conservation index | 0.59 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2596052 117 + 22224390 GCGGUAAUUUGGCGUUUUCAAUGGCGCGCGAAAUAUGUUUGUGUGUAUAGAAUGUGCGCGCUAAAAUCCGCAUUUACAUAUGUAUGUAUGAACAUACA---CAAUGUGUGUGUUGCGCUA ((((...((((((((.(((....(((((((((.....)))))))))...))).....))))))))..)))).....(((((....)))))((((((((---(...)))))))))...... ( -38.20) >DroSec_CAF1 4865 116 + 1 GCGGUAAUUUUGCGUUUUCAAUCGCGCGCGAAAAAUGUUUGUGUGUAUAGAAUGUGCGCCCUAAAAUCCGCACUUACAUAUGUAU----GUAUGUGUAUGUUAAUGUGUGUGUUGCGCUA (((........((((.(((.((.(((((((((.....))))))))))).)))...)))).....((..(((((..(((((..((.----...))..)))))....)))))..)).))).. ( -31.70) >DroSim_CAF1 4870 120 + 1 GCGGUAAUUUUGCGUUUUCGAUCGCGCGCGAAAAAUGCUUGUGUGUAUUGAAAAUGCGCCCUAAAAUCCGCAUUUACAUAUGUAUGUAUGUAUGUGCAUGUUAAUGUGUGUGUUGCGCUA ((((......((((((((((((.((((((((.......)))))))))))))))))))).........))(((..(((((((.(((((((....)))))))...)))))))...))))).. ( -39.36) >DroYak_CAF1 4992 113 + 1 GCGGUAGAUUUGCGUUUUCACUCGCGCGCAAAAUAUGUUUGUAUGUAUAGCAUCUGCAUG-UAACAUCCAUGUUGGCGUAUGUAUGUUUGU----G--UGCAAGUGUGUGUAUUCCGCCA ..((..((..((((....((((.(((((((((........((((((((.((....(((((-.......)))))..)))))))))).)))))----)--))).))))..)))).))..)). ( -33.40) >consensus GCGGUAAUUUUGCGUUUUCAAUCGCGCGCGAAAAAUGUUUGUGUGUAUAGAAUGUGCGCCCUAAAAUCCGCAUUUACAUAUGUAUGUAUGUAUGUGCAUGUUAAUGUGUGUGUUGCGCUA (((........(((..(((....(((((((((.....)))))))))...)))..))).......(((.(((((....(((((((((......)))))))))....))))).))).))).. (-21.15 = -22.53 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:29 2006