Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 375,925 – 376,045 |
Length | 120 |
Max. P | 0.557156 |
Location | 375,925 – 376,045 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -55.47 |
Consensus MFE | -38.44 |
Energy contribution | -39.67 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.09 |
Mean z-score | -1.60 |
Structure conservation index | 0.69 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 375925 120 - 22224390 UACCGGAGCUGGCGGCGGAGUAGACACACAGGCACAGCUAAUGCAGAGUGCCGCUGCAGCCGCAGCAGUGGCGGCAACAAACGCGGCCGCCGCUCCCGUACAGAAUGCAGCCGCCGUGGC ..(((....((((((((((((..((.....(((((.((....))...)))))(((((....))))).))((((((..(....)..))))))))))).(((.....))).)))))))))). ( -55.90) >DroVir_CAF1 12643 114 - 1 CACGGGCGCCACCGGC---GUGGAUACACAGGCGCAGCUAAUGCAGAGCGCUGCCGCGGCGGCUGCUGUUGCCGCAACAAAUG---CGGCUGCGCCCGUGCAGAAUGCAGCGGCCGUUGC (((((((((..(((((---(((....))).(((((.((....))...))))))))((((((((....))))))))........---.))..)))))))))......(((((....))))) ( -60.50) >DroEre_CAF1 9703 120 - 1 CACCGGAGCUGGCGGCGGAGUGGACACACAGGCACAGCUAAUGCAGAGUGCAGCGGCAGCCGCAGCAGUGGCGGCAACAAACGCGGCCGCCUCGCCCGUACAGAACGCAGCCGCCGUGGC .......((((.((((((.(((..(..((.(((...((....)).(((.((.((.((.(((((....)))))(....)....)).)).)))))))).))...)..)))..)))))))))) ( -50.00) >consensus CACCGGAGCUGGCGGCGGAGUGGACACACAGGCACAGCUAAUGCAGAGUGCAGCCGCAGCCGCAGCAGUGGCGGCAACAAACGCGGCCGCCGCGCCCGUACAGAAUGCAGCCGCCGUGGC .......((((.((((((.(((....)))..((...((....))...((((.((.((....)).)).((((((((..(....)..))))))))....)))).....))..)))))))))) (-38.44 = -39.67 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:05 2006