Locus 928

Sequence ID X_DroMel_CAF1
Location 2,588,934 – 2,589,028
Length 94
Max. P 0.937852
window1512 window1513

overview

Window 2

Location 2,588,934 – 2,589,028
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 79.86
Mean single sequence MFE -36.50
Consensus MFE -24.52
Energy contribution -25.17
Covariance contribution 0.64
Combinations/Pair 1.30
Mean z-score -2.40
Structure conservation index 0.67
SVM decision value 1.26
SVM RNA-class probability 0.937852
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2588934 94 + 22224390
AGUUGCGGCUCUCGCUGGAAUUCAAGCGGAGUGUCCAUCGCAUGGACAGAAUUCUGCGGCAGAGUCAUGCGGACUUUUGCCGCAGCAAAAAGAU
..((((.((((.((((........))))))))((((((...)))))).......((((((((((((.....))).)))))))))))))...... ( -38.90)
>DroSec_CAF1 2283 94 + 1
AGUUGCAACUCUCGCUGGAGUUCAAGCGGAGUGUCCACCGCAUGGACAGAAUUCUGCGGCAGAGCCAUGCGGACUUUUGCCGCAGCAAAAGGAU
..((((.((((.((((........))))))))(((((.....))))).......((((((((((((....)).).)))))))))))))...... ( -36.50)
>DroSim_CAF1 3684 94 + 1
AGUUGCAACUCUCGCUGGAGUUCAAGCGGAGUGUCCACCGCAUGGACAGAAUUCUGCGGCAGAGUCAUGCGGACUUUUGCCGCAGCAAAAGGAU
..((((.((((.((((........))))))))(((((.....))))).......((((((((((((.....))).)))))))))))))...... ( -38.10)
>DroEre_CAF1 4198 94 + 1
AGCUGCGGCUCUCGCUGGAGUUCAAGCGCAGUGUCCACCGCAUGGACAGAAUUCUGCGGCAGAGUCAUGCGGACUUUUGCCGCAGCAAGAGGAU
.((((((((.......(((((((...(((((((((((.....)))))).....)))))(((......)))))))))).))))))))........ ( -40.20)
>DroYak_CAF1 5028 94 + 1
AGCUGCGGCUCUCGCUGGAGUUCAAGCGCAGUGUCCACCGCAUGGACAGAUUACUGCGGCAGAGUCAUGCGGACUUUUGCCGCAGCAAGAGGAU
.((((((((.......(((((((...(((((((((((.....))))).....))))))(((......)))))))))).))))))))........ ( -40.30)
>DroPer_CAF1 5393 94 + 1
AUCUCGAGCAGGUCAUGGAGUUCAAGCAGAAGGCCCGCAACAUAGAUCAGUUCCUAAGGGAACGUCAUGAAAAGCGCUGUGCCAGCCUGCCAAU
.....(.((((((.......(((.....)))(((((((..(((.(((..(((((....)))))))))))....)))..).))).)))))))... ( -25.00)
>consensus
AGCUGCAGCUCUCGCUGGAGUUCAAGCGGAGUGUCCACCGCAUGGACAGAAUUCUGCGGCAGAGUCAUGCGGACUUUUGCCGCAGCAAAAGGAU
.(((..(((((......)))))..)))....((((((.....)))))).....(((((((((((((.....))).))))))))))......... (-24.52 = -25.17 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 2,588,934 – 2,589,028
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -34.05
Consensus MFE -23.51
Energy contribution -23.35
Covariance contribution -0.16
Combinations/Pair 1.38
Mean z-score -2.28
Structure conservation index 0.69
SVM decision value 1.21
SVM RNA-class probability 0.931098
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2588934 94 - 22224390
AUCUUUUUGCUGCGGCAAAAGUCCGCAUGACUCUGCCGCAGAAUUCUGUCCAUGCGAUGGACACUCCGCUUGAAUUCCAGCGAGAGCCGCAACU
......(((((((((((..((((.....)))).)))))))......(((((((...)))))))(((((((.(....).)))).)))..)))).. ( -33.60)
>DroSec_CAF1 2283 94 - 1
AUCCUUUUGCUGCGGCAAAAGUCCGCAUGGCUCUGCCGCAGAAUUCUGUCCAUGCGGUGGACACUCCGCUUGAACUCCAGCGAGAGUUGCAACU
...(((((((....))))))).((((((((.......((((....))))))))))))((.(.((((((((.(....).)))).))))).))... ( -34.11)
>DroSim_CAF1 3684 94 - 1
AUCCUUUUGCUGCGGCAAAAGUCCGCAUGACUCUGCCGCAGAAUUCUGUCCAUGCGGUGGACACUCCGCUUGAACUCCAGCGAGAGUUGCAACU
.........((((((((..((((.....)))).))))))))......((((((...))))))((((((((.(....).)))).))))....... ( -34.50)
>DroEre_CAF1 4198 94 - 1
AUCCUCUUGCUGCGGCAAAAGUCCGCAUGACUCUGCCGCAGAAUUCUGUCCAUGCGGUGGACACUGCGCUUGAACUCCAGCGAGAGCCGCAGCU
........((((((((....(((.....)))((..(((((............)))))..))..((.((((.(....).)))))).)))))))). ( -37.50)
>DroYak_CAF1 5028 94 - 1
AUCCUCUUGCUGCGGCAAAAGUCCGCAUGACUCUGCCGCAGUAAUCUGUCCAUGCGGUGGACACUGCGCUUGAACUCCAGCGAGAGCCGCAGCU
........((((((((....(((.....)))((..(((((............)))))..))..((.((((.(....).)))))).)))))))). ( -37.50)
>DroPer_CAF1 5393 94 - 1
AUUGGCAGGCUGGCACAGCGCUUUUCAUGACGUUCCCUUAGGAACUGAUCUAUGUUGCGGGCCUUCUGCUUGAACUCCAUGACCUGCUCGAGAU
.((((((((..(((.....)))..(((((..(((((....)))))........(((.(((((.....))))))))..)))))))))).)))... ( -27.10)
>consensus
AUCCUCUUGCUGCGGCAAAAGUCCGCAUGACUCUGCCGCAGAAUUCUGUCCAUGCGGUGGACACUCCGCUUGAACUCCAGCGAGAGCCGCAACU
.........((((((((..((((.....)))).)))))))).....(((((((...)))))))...((((.(....).))))............ (-23.51 = -23.35 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:26 2006