Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,588,548 – 2,588,656 |
Length | 108 |
Max. P | 0.948873 |
Location | 2,588,548 – 2,588,656 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 69.32 |
Mean single sequence MFE | -31.28 |
Consensus MFE | -11.27 |
Energy contribution | -12.12 |
Covariance contribution | 0.85 |
Combinations/Pair | 1.26 |
Mean z-score | -2.13 |
Structure conservation index | 0.36 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.948873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2588548 108 + 22224390 CCUUUGACCAACCAC-------CAAGCCACUGUG---C-CUCUGGUCACUUCCAAGCUGAUGUGCCUGGCUAGCUAUUUUGAGUGCCACCACUAACGCAUCAGCUGGACUUUGGCAUCA ...............-------...((((..(((---(-(...)).))).((((.(((((((((..((((..(((......))))))).......)))))))))))))...)))).... ( -32.10) >DroSec_CAF1 1873 108 + 1 CCUUUAGCCAACCUC-------CAAGCCACUGUG---C-CUCUGGCCAUUUCCAAGCUGCUGUGCCUGGCUAGCUAUUUUAAGUGCCACCACUAACGCAUCAGCUGGACUUUGGCAACA ......(((((..((-------(..((((.....---.-...))))........(((((.((((..((((..(((......))))))).......)))).))))))))..))))).... ( -30.50) >DroSim_CAF1 3274 108 + 1 CCUUUAGUCAACCUC-------CAAGCCCAUGUG---C-CUCUGGCCAUUUCCAAGCUGCUGUGCCCGGCUAGCUAUUUUAAGUGCCACCACUAACGCAUCAGCUGGACUUUGGCAACA ......(((((..((-------((.((..(((((---.-...((((.((((...((((((((....)))).)))).....)))))))).......)))))..))))))..))))).... ( -30.10) >DroEre_CAF1 3814 117 + 1 CCUCUAGUCGCGCACCCCUAUUUAGUGAC--GCACAACACUGGGGCAAUUUUCAAGCUUCUGUGUCUGGCUAGCUGUUGUCAGUGCCAUCACUAACGGCUCAGCUGGCCCUUCGCAUCA ......(((((.............)))))--((...((((.(((((.........))))).))))..(((((((((((((.((((....)))).)))))..))))))))....)).... ( -38.32) >DroYak_CAF1 4648 105 + 1 CCACCAGUCACAUAAGCGCCUUUAUGGACCUGUACAAC-CUUUGGCUAUUUCCAAG-------------CUAGCUCUUUGCAGUGCCAGCACUAAUGGAUCAGCUGAGUUUUGACAUCA ......(((.((((((....))))))))).(((.(((.-.((..(((...((((..-------------...((.....))((((....))))..))))..)))..))..))))))... ( -25.40) >consensus CCUUUAGUCAACCAC_______CAAGCCCCUGUG___C_CUCUGGCCAUUUCCAAGCUGCUGUGCCUGGCUAGCUAUUUUAAGUGCCACCACUAACGCAUCAGCUGGACUUUGGCAUCA ......((((.........................................(((.((......)).)))((((((......((((....))))........))))))....)))).... (-11.27 = -12.12 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:24 2006