Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,568,542 – 2,568,644 |
Length | 102 |
Max. P | 0.730186 |
Location | 2,568,542 – 2,568,644 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 79.08 |
Mean single sequence MFE | -43.08 |
Consensus MFE | -27.68 |
Energy contribution | -29.55 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.33 |
Mean z-score | -1.58 |
Structure conservation index | 0.64 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2568542 102 + 22224390 UGUGGCAGCUGUGGCGGCGCAGGCACAGACGACGCUGGUGGCAGCGGAAUAGUCGGCAAUGUGGGCGCUGUCGGAGGAGCUGGCGCGGGUGUCGCUGUAGAU ((..((.((((((.(......).))))).)((((((.(((.((((.......((((((.((....)).))))))....)))).))).))))))))..))... ( -45.00) >DroVir_CAF1 17799 93 + 1 UGUGGCAGCUGCGGCGGCGCUGGCGCAC------UUGGCGGCAACGGUAUGGCAGGCAAUGAGGGCGCUGUUGGCGGCGCUGGCACCGACGUCG---UGGCU ......(((..((((((.((..((((..------(..(((((..(..(((........)))..)..)))))..)..))))..)).))...))))---..))) ( -41.30) >DroSec_CAF1 3361 102 + 1 UGAGGCAGCUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAGCGGAAUAGUCGGCAAUGUGGGCGCUGUCGGAGGAGCUGGAGCGGGCGCUAUUGAUGAU ...(((..((.(((((((((..((((((((..(((((....))))).....)))))...)))..))))))))).))..)))..(((....)))......... ( -43.20) >DroSim_CAF1 3543 102 + 1 UGUGGCAGCUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAGCGGAAUAGUCGGCAAUGUGGGCGCUGUCGGAGGAGCUGGUGCGGGCGUUAUUGUGGAU .(((.(((((.(((((((((..((((((((..(((((....))))).....)))))...)))..))))))))...).))))).)))................ ( -43.10) >DroEre_CAF1 3436 102 + 1 UGUGGUAGUUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAACGGAAUAGUCGGUAAUGUUGGCGCGGUCGGAGGAGCCGGCGUUGCCGUCGCUAUGGAU ..(.(((((..(((((((((.(((.((..((((.(..(((.(((((..((.....))..))))).))))))))..)).))).)))))))))..))))).).. ( -47.30) >DroYak_CAF1 3476 102 + 1 UGUGGAAUUUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAAUGGAAUAGUCGGUAAUGUGGGCGCUUGCGGUGGAGCAGGCGUUUUGGUCGCUAUGGUU ........(..((((((((((...((((((....(((.......)))....))))))..)))((((((((((......))))))))))..)))))))..).. ( -38.60) >consensus UGUGGCAGCUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAACGGAAUAGUCGGCAAUGUGGGCGCUGUCGGAGGAGCUGGCGCGGGCGUCGCUGUGGAU .(((.(((((.(((((((((..((((((((..(((((....))))).....)))))...)))..)))))))))....))))).)))................ (-27.68 = -29.55 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:21 2006