Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,560,038 – 2,560,134 |
Length | 96 |
Max. P | 0.976832 |
Location | 2,560,038 – 2,560,134 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 72.93 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -8.19 |
Energy contribution | -8.71 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.23 |
Mean z-score | -2.21 |
Structure conservation index | 0.29 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.976832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2560038 96 - 22224390 CACGCCAUGGGCGUAGCUUGCUUUAAAAUGGGGAUCCAUCCCCCAGGAGCAUAUGUAAGGUGUAUUUAC--UUUACUGAAAUGCACAAUGCACUUUUA .(((((...)))))....((((((....(((((.......)))))))))))..((((..((((((((.(--......)))))))))..))))...... ( -29.60) >DroSec_CAF1 2057 96 - 1 CAGGACAUGGGCGUAGUUUGCUAUAUGAUGGGGGUCCAUCCCCCAGAAGCAUAUGUAAGCUAUAUUUAC--UUUACUGAAAUUCACAAAGCACUUUUA (((....((((..((((((((.(((((.((((((.....))))))....)))))))))))))..)))).--....))).................... ( -28.90) >DroSim_CAF1 4111 96 - 1 CAGGCCAUGGGCGUAGUUUGCUAUAUGAUGGGGGUCCAUCCCCCAGAAGCAUAUGUAAGCUAUAUUUAC--UUUACUGAAAUGCACAAUGCAGCUCUA ........(((((((((((((.(((((.((((((.....))))))....))))))))))))))......--..........(((.....))))))).. ( -33.90) >DroEre_CAF1 2248 94 - 1 CGGGCCAUGGGCGU-GCAUGGUAUAGAAAGGGGAU-UUUCCCCCAAGCGCAUAUUUAAGGUGUAGGUAU--UUUAGUGAAACACUCCAUGCGCCUUUG .(((((((((..((-((.(((.........(((..-...)))))).))))........(((((...(((--....)))..)))))))))).))))... ( -28.80) >DroYak_CAF1 3600 92 - 1 CAGGCCAUGGGCGUAGCCUGGUAUAGAAAAGGGAUAUUUCGCCCGAGAACAUAUUCAAGGAGUAUUUAUGUUUAAGUGAAAUAUG------GAGUAUU (((((.((....)).))))).............(((((((((....(((((((.............)))))))..))))))))).------....... ( -19.82) >consensus CAGGCCAUGGGCGUAGCUUGCUAUAGAAUGGGGAUCCAUCCCCCAGGAGCAUAUGUAAGGUGUAUUUAC__UUUACUGAAAUACACAAUGCACCUUUA ...(((...)))....(((((.......(((((.......))))).........)))))....................................... ( -8.19 = -8.71 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:12 2006