Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,555,525 – 2,555,633 |
Length | 108 |
Max. P | 0.697601 |
Location | 2,555,525 – 2,555,633 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 75.41 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -11.04 |
Energy contribution | -12.88 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.16 |
Mean z-score | -1.85 |
Structure conservation index | 0.48 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2555525 108 + 22224390 CUACUUCAGACCCACAUU--------ACCAUUGGCUACGUAAAUCAUGGCACGACCAUAGAGAAACGUAUACUUCUAUUGUUGGUCAAUGCUAUCUACCUUCUGUAGUCGCUUUAU ..................--------......(((((((......((((((.(((((...((((........)))).....)))))..))))))........)))))))....... ( -21.44) >DroSec_CAF1 11302 105 + 1 CCACUUCA---CCACAUU--------ACCAUUGGCUACGUAAACAAUGGCACGACCAUAGAGAAAAGUAUACUUUUAUUGUUGGUCAAUGCUAUCUACCUUUUGUAGUCGCUUUAU ........---.......--------......(((((((......((((((.(((((.....(((((....))))).....)))))..))))))........)))))))....... ( -23.74) >DroSim_CAF1 24880 105 + 1 CUACUUCA---UCACAUU--------ACCAUUGGCUACGUAAACCAUGGCACGACCAUAGAGAAAAGUAUACUUUUAUUGUUGGUCAAUGCUAUCUACCUUUUGUAGUCGCUUUAU ........---.......--------......(((((((......((((((.(((((.....(((((....))))).....)))))..))))))........)))))))....... ( -23.74) >DroEre_CAF1 11186 113 + 1 UUACUUCG---CCACAUUAUCACAUUCGCAUUGGUUGCGGAAAUCUUGGCAAGACCAUUGCAAAACGUAUGGUUUUAUUGUUGGUCAAUGCUAUCUUUUCAAAAUUUGCACUUUAU .......(---(..............((((.....))))((((...(((((.(((((....(((((.....))))).....)))))..)))))...)))).......))....... ( -23.00) >DroYak_CAF1 11282 97 + 1 UUACUUUA---CCA----------------UAGCUGGCGGAAAUCUUGGCACGACCAUAAUAAAACGUAUAGUUUUAUUGUUGCUCCAUGAUAUCUACUCGUUGUAGUCGUUUUAU .......(---(.(----------------((((.((..((.(((.(((..((((...((((((((.....))))))))))))..))).))).))..)).))))).))........ ( -22.50) >consensus CUACUUCA___CCACAUU________ACCAUUGGCUACGUAAAUCAUGGCACGACCAUAGAGAAACGUAUACUUUUAUUGUUGGUCAAUGCUAUCUACCUUUUGUAGUCGCUUUAU ................................(((((((......((((((.((((((((.((((.......)))).))).)))))..))))))........)))))))....... (-11.04 = -12.88 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:08 2006