Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,554,960 – 2,555,080 |
Length | 120 |
Max. P | 0.943576 |
Location | 2,554,960 – 2,555,080 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -52.55 |
Consensus MFE | -44.33 |
Energy contribution | -44.20 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.18 |
Mean z-score | -2.17 |
Structure conservation index | 0.84 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2554960 120 - 22224390 CGAUACGGAACAAGUUGCCGCUGGUGCAGUAGUGACCACCGGAGAUUUGGCGUCGUGGCCGUUGCUGCCUGCGCUGGAAUUGUGGGUCGUCGGUUGAACCGGCGAUUCCUCCUUGUCUUC .((((.(((((((.......(..(((((((((..((..(((..(((.....))).)))..))..))).))))))..)..))))((((((((((.....)))))))))).))).))))... ( -47.70) >DroSec_CAF1 10748 120 - 1 GGAUACGGAUAAAGUUGCUGCCGGUGCAGAAGUAACCACUGGAGAUUUGGCGUCGUUGCCGUUGCUGCCUGCGCUGGAAUUGGGGGUCGUCGGUUGAACCGGCGACUCCUCCUUGUCUUC (((((.(((...........(((((((((.((((((..(....)....((((....))))))))))..))))))))).....(((((((((((.....)))))))))))))).))))).. ( -54.20) >DroSim_CAF1 24321 120 - 1 GGAUACGGAUAAAGUUGCUGCCGGUGCAGAAGUAACCACUGGAGAUUUGGCGUCGUUGCCGUUGCUGCCUGCGCUGGAAUUGGGGGUCGUCGGUUGAACCGGCGACUCCUCCUUGUCUUC (((((.(((...........(((((((((.((((((..(....)....((((....))))))))))..))))))))).....(((((((((((.....)))))))))))))).))))).. ( -54.20) >DroYak_CAF1 10686 120 - 1 CGCUGUGGAUAAAGUGGCCGCCGGUGCAGUGGUGGCCACCGGAGAUUUAACAUCGUGACCGUUGCUGCCUGCGCUGGAAUUGUGGGUCGUCGGUUGGACCGGCGACUCCUCCUUGUCCUC ......((((((.((((((((((......)))))))))).((((..............(((.(((.....))).)))......((((((((((.....)))))))))))))))))))).. ( -54.10) >consensus CGAUACGGAUAAAGUUGCCGCCGGUGCAGAAGUAACCACCGGAGAUUUGGCGUCGUGGCCGUUGCUGCCUGCGCUGGAAUUGGGGGUCGUCGGUUGAACCGGCGACUCCUCCUUGUCUUC .((((.(((...........((((((((((((((((....((.(((.....)))....))))))))).))))))))).....(((((((((((.....)))))))))))))).))))... (-44.33 = -44.20 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:07 2006