Locus 912

Sequence ID X_DroMel_CAF1
Location 2,551,639 – 2,551,756
Length 117
Max. P 0.535031
window1490

overview

Window 0

Location 2,551,639 – 2,551,756
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.60
Mean single sequence MFE -45.80
Consensus MFE -27.22
Energy contribution -29.95
Covariance contribution 2.73
Combinations/Pair 1.22
Mean z-score -2.12
Structure conservation index 0.59
SVM decision value 0.00
SVM RNA-class probability 0.535031
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2551639 117 + 22224390
CUCUCCAUGGCACGCGAGAAGGGCUUUUUGCCACC---GCUGCCCAUCGCACCGCCGCCCUCGGUCUCAUCCGCGUCGCGUACGUAGAUGGGACCGAGGGUGUCGUUCAUGCCGAACUUC
.......(((((.((((...((((.....((....---)).)))).))))..((.((((((((((((((((..(((.....)))..)))))))))))))))).))....)))))...... ( -58.80)
>DroSec_CAF1 7429 117 + 1
CUCUCCAUAGCCCGCGAGAAGGUCUUCUAGCCACC---GCUGCCCAUCGCACCACCGCCCUCGGUCUCAUCCGCGUCGCGUACGUAGAUGGGACCGAGGGUGUCGUUCAUGCCGAACUUC
.............((((...(((.....(((....---))))))..)))).....((((((((((((((((..(((.....)))..))))))))))))))))..((((.....))))... ( -49.10)
>DroEre_CAF1 7244 117 + 1
CUCUCCAUGGCCCGCGAGAAGGGCUUCUUGCCACC---GCUGCCCAUCGCACCGCCGCCCUCCGUCUCAUCCGCGUCGCGUACGUAGAUGGGACCCAGGGUGUCGUUCAUGCCGAACUUC
.......((((..((((...((((.....((....---)).)))).))))..((.((((((..((((((((..(((.....)))..))))))))..)))))).)).....))))...... ( -46.90)
>DroYak_CAF1 7300 117 + 1
CUCUCCAUGGCCCGCGAGAAGGGCUUCUUGCCACC---GCUGCCCAUCGCACCGCCGCCCUCCGUCUCAUCCGCGUCCCGUACGUAGAUGGGACCCAGGGUGUCGUUCAUGCCGAACUUU
.......((((..((((...((((.....((....---)).)))).))))..((.((((((..((((((((..(((.....)))..))))))))..)))))).)).....))))...... ( -46.90)
>DroMoj_CAF1 23556 111 + 1
CUAUCCAUGGCACGGGAGAAGGGCUUGGCGCUGCC---GCUG------GCGCCGCCGCCGCCAGAUUCAUUCGCGUCGCGCACAUAGAUCGGGCCCAGCUUUUCGUUCAUGCCAAAUUUC
.......(((((.(((.((((((((.((((.((((---...)------))).))))...(((.(((..((..(((...)))..))..))).)))..)))))))).))).)))))...... ( -40.40)
>DroAna_CAF1 7536 120 + 1
CUCUCCAUGGCCCUCGAGAAGGGCUUCUUGCCGCCACCGGCUCCCAGCGAACCCCCACCCUCUGUCUCGUCAGCAUCCCGCACAUAGAUGGGACCCAGGCUCGGAUUCAUGCCAAACUUC
.......(((((((.....)))(((....((((....))))....)))(((.((....(((..((((((((.((.....)).....))))))))..)))...)).)))..))))...... ( -32.70)
>consensus
CUCUCCAUGGCCCGCGAGAAGGGCUUCUUGCCACC___GCUGCCCAUCGCACCGCCGCCCUCCGUCUCAUCCGCGUCGCGUACGUAGAUGGGACCCAGGGUGUCGUUCAUGCCGAACUUC
.......((((..((((...((((.................)))).))))..((.((((((..((((((((.((((.....)))).))))))))..)))))).)).....))))...... (-27.22 = -29.95 +   2.73) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:04 2006