Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,543,508 – 2,543,609 |
Length | 101 |
Max. P | 0.563335 |
Location | 2,543,508 – 2,543,609 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 85.30 |
Mean single sequence MFE | -39.44 |
Consensus MFE | -29.92 |
Energy contribution | -30.28 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.57 |
Structure conservation index | 0.76 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2543508 101 + 22224390 AGCCGGGAUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCA------ACGCGAGAGCAAAAGCACAUCGCACUGCACGUGAAUGCAGCGUCGC ....(.(((((..((((.((((.(((((.....))))))))).(((((((.(...------.)((((..((....))...)))).)))).)))...))))))))).) ( -37.70) >DroSec_CAF1 6558 101 + 1 AGCCGGGCUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCA------ACGCGAGAGCAAAAGCACAUCGCACUGCACGUGAAUACAGCGUCGC .((.(.((((..(..((.((((.(((((.....)))))))))....((((.(...------.)((((..((....))...)))).)))).))..)...)))).).)) ( -35.70) >DroSim_CAF1 6629 101 + 1 AGCCGGGCUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCA------ACGCGAGAGCAAAAGCACAUCGCACUGCACGUGAAUGCAGCGUCGC .((.(.((((((((....((((.(((((.....))))))))).(((((((.(...------.)((((..((....))...)))).)))).))).)))))))).).)) ( -42.10) >DroEre_CAF1 6650 92 + 1 AGCUGCGCUGCACUGCGAGUGCAUAACGACAUCCGCUGGCGGAGCGGCG---------------GGAGAACCUAGGCACAUCGCGCCGCACGUGAAUGCAGCUCAGU .((((.((((((((((.((((.((......)).)))).)))).((((((---------------.((...(....)....)).)))))).......)))))).)))) ( -41.60) >DroYak_CAF1 6769 107 + 1 AGCUGGGCUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCAACAGCAACGCGAGAGUCACGGCACAUCGCACUGCACGUGAAUGCAGCGUCGU .((.(.((((((((....((((.(((((.....))))))))).(((((((.(....)......((((..((....))...)))).)))).))).)))))))).).)) ( -40.10) >consensus AGCCGGGCUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCA______ACGCGAGAGCAAAAGCACAUCGCACUGCACGUGAAUGCAGCGUCGC .((.(.(((((((((((.........((...((((....)))).))((((.............((....))....((.....)).)))).))).)))))))).).)) (-29.92 = -30.28 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:03 2006