Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 359,996 – 360,107 |
Length | 111 |
Max. P | 0.560896 |
Location | 359,996 – 360,107 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.05 |
Mean single sequence MFE | -30.37 |
Consensus MFE | -19.38 |
Energy contribution | -21.82 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.23 |
Structure conservation index | 0.64 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 359996 111 + 22224390 U----CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA--AACAAUGUUGGCUGUCG---UGUGGAUGAAUUGGUUUGGUUUUGUCUCGAAUCUUUUGUACAUACA .----........(((((...(((..(((((.((((.((((((((.......--.....)))))))).)))---))))))..))).)))))(((((......)))))............. ( -30.20) >DroSec_CAF1 6131 111 + 1 C----CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA--AACAAUGUUGGCUGUCG---UGUGGAUGAAUUGGUUUGGUUUUGUCUCGAAUCUUUUGUACAUACA .----........(((((...(((..(((((.((((.((((((((.......--.....)))))))).)))---))))))..))).)))))(((((......)))))............. ( -30.20) >DroSim_CAF1 3137 111 + 1 C----CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA--AACAAUGUUGGCUGUCG---UGUGGAUGAAUUGGUUUGGUUUUGUCUCGAAUCUUUUGUACAUACA .----........(((((...(((..(((((.((((.((((((((.......--.....)))))))).)))---))))))..))).)))))(((((......)))))............. ( -30.20) >DroEre_CAF1 6286 99 + 1 U----CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUAAAAAUAAUGUUGGCUGUCGUU------------CGGU-----UUUGUCUCGAAUCUGUUGUACAUACA .----......((.(((....(((((...(((((((.((((((((..............)))))))).)))..------------))))-----.......)))))..))).))...... ( -20.54) >DroYak_CAF1 6304 117 + 1 UUGUGCUCAUUUGGAAGCUUCAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA--AAUAAUGCUGGCUGUCGUCGUGUGGAUGAAUGGGUUUCG-UUUGUCUCGAAUCUUUUGUACAUACA .(((((.......((((((.((((..((((((((((.((((((((.......--.....)))))))).))).)).)))))..))))))))))(-((((...))))).....))))).... ( -40.70) >consensus U____CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA__AACAAUGUUGGCUGUCG___UGUGGAUGAAUUGGUUUGGUUUUGUCUCGAAUCUUUUGUACAUACA .............(((((...((((((((((..(((.((((((((..............)))))))).)))....)))))))))).)))))............................. (-19.38 = -21.82 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:01 2006