Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,516,129 – 2,516,249 |
Length | 120 |
Max. P | 0.706017 |
Location | 2,516,129 – 2,516,249 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -35.27 |
Consensus MFE | -31.61 |
Energy contribution | -31.50 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.98 |
Structure conservation index | 0.90 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2516129 120 - 22224390 UCCGCGAUCAUCGCAGUCGACAUCAUCAUCAUCACAGAUAUCCACCUCAUCGAUGCGAUCCUCCACAUCGAAUCCCUGGGUUCCGGUGCUGUUCGUACUCUUGUACUUAAUGCGGCUGCG ...........((((((((.(((......((.(((....(((((.....((((((.(......).)))))).....)))))....))).))...((((....))))...))))))))))) ( -34.30) >DroEre_CAF1 15107 117 - 1 UCCACGAUCAUCGCAGUCGACGUCA---UCAUCACAGAUAUCCACCUCAUCGAUGCGAUCCUCGACAUCGAAUCCCUGGGUUCCGGUGCUGUUCGUACUCUUGUACUUAAUGCGGCUGCG ...........((((((((.(((..---.((.(((....(((((.....((((((((.....)).)))))).....)))))....))).))...((((....))))...))))))))))) ( -35.90) >DroYak_CAF1 16361 117 - 1 UCCGCGAUCAUCGCAGUCGACGUCG---UCAUCACAGAUAUCCACCUCAUCGAUGCGGUCCUCCACAUCGAAUCCCUGAGUUCCGGUGCUGUUCGUACUCUUGUACUUAAUGCGGCUGCG ...........((((((((.(((..---.....((((.((((...((((((((((.((....)).)))))).....))))....))))))))..((((....))))...))))))))))) ( -35.60) >consensus UCCGCGAUCAUCGCAGUCGACGUCA___UCAUCACAGAUAUCCACCUCAUCGAUGCGAUCCUCCACAUCGAAUCCCUGGGUUCCGGUGCUGUUCGUACUCUUGUACUUAAUGCGGCUGCG ...........((((((((.(((..........((((.((((...((((((((((.(......).)))))).....))))....))))))))..((((....))))...))))))))))) (-31.61 = -31.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:49 2006