Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,514,028 – 2,514,118 |
Length | 90 |
Max. P | 0.901884 |
Location | 2,514,028 – 2,514,118 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 72.96 |
Mean single sequence MFE | -21.43 |
Consensus MFE | -12.11 |
Energy contribution | -13.93 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.05 |
Mean z-score | -1.95 |
Structure conservation index | 0.57 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2514028 90 - 22224390 ------------GGUUAAGGAACAUCAUCGCCGCAUUACUGCGAAUAAGGGGAUAGUCCGCAAGUCUUAUUUAUUUAAAUAAGAUUGAGUAGUUAUCCAAGA ------------((.((((((..(((..(..((((....)))).....)..)))..)))((.((((((((((....))))))))))..))..))).)).... ( -20.00) >DroSec_CAF1 12362 71 - 1 -------------------------------CGCAUUACUGCGAAUAAGGGGAGAGUCCGCAAGUCUUAUUUAUUUAAAUGAGAUUGAGUAGUUUGCCAAGA -------------------------------.(((..(((((......(.((.....)).).((((((((((....))))))))))..))))).)))..... ( -19.50) >DroSim_CAF1 12314 71 - 1 -------------------------------CGCAUUACUGCGAAUAAGGGGAGAGUCCGCAAGUCUUAUUUAUUUAAAUGAGAUUGAGUAGUUUGCCAAGA -------------------------------.(((..(((((......(.((.....)).).((((((((((....))))))))))..))))).)))..... ( -19.50) >DroEre_CAF1 12912 95 - 1 AAGGUGUUUCGAGGAUAAGGAACA---UCGCCGCAUUACUGCGGAUAAGGGGAGAGUCCGCAAGUCGUA----UUUAAAUGAGAUUGACUCGUUUGCAAAGA ..((((((((........))))))---))...((((.(((((((((.........)))))).))).)).----...(((((((.....)))))))))..... ( -26.70) >consensus _______________________________CGCAUUACUGCGAAUAAGGGGAGAGUCCGCAAGUCUUAUUUAUUUAAAUGAGAUUGAGUAGUUUGCCAAGA ................................(((..(((((......(.((.....)).).((((((((((....))))))))))..))))).)))..... (-12.11 = -13.93 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:37 2006