Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,512,288 – 2,512,406 |
Length | 118 |
Max. P | 0.780265 |
Location | 2,512,288 – 2,512,406 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.32 |
Mean single sequence MFE | -30.28 |
Consensus MFE | -22.96 |
Energy contribution | -23.60 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.86 |
Structure conservation index | 0.76 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2512288 118 - 22224390 UCCACAGUUCCAUCAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAUCAACCGCGCGAAAGUGAAAGUA--CAACAACAACGAGCGCAUAGAACAGCAUAAAAUAGAA ......((((.((...(((.(((((.(((.(((((((((.....)))))))..............(((....)))...)).--)))...))))).))).)).)))).............. ( -27.80) >DroSec_CAF1 10726 115 - 1 UCCACUGUUUCAUCAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAUCAACCGCGCGAAAGUGAAAGUA--CAA---CAACGAGCGCAUAGAACAGCAUAAAAUAGAA ....(((((..((...(((.(((((.(((.(((((((((.....)))))))..............(((....)))...)).--)))---))))).))).))..)))))............ ( -31.50) >DroSim_CAF1 11559 115 - 1 UCCACUGUUCCAUCAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAUCAACCGCGCGAAAGUGAAAGUA--CAA---CAACGAGCGCAUAGAACAGCAUGAAAUAGAA ....((((((.((...(((.(((((.(((.(((((((((.....)))))))..............(((....)))...)).--)))---))))).))).)).))))))............ ( -32.80) >DroEre_CAF1 11125 116 - 1 UCCACUGUUUCAUCAACGCCUGUUGCUUGCACGGCAGCGCCAUCUGUUGGCCACCUCGACAACCGCGCGAAAGUGAAAGUUU-CAA---CAACGAGCGCAUAGAACAGCAUAAAAUAGAA ....((((((.......((((((.....))).))).((((....((((((..........(((..(((....)))...))))-)))---))....))))...))))))............ ( -28.00) >DroYak_CAF1 12374 101 - 1 UCCACUGUUUCAACAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAGCAACCGCGCGAAAGUGAAAGUUCGCAU---CGACGAGCGCAUAGA---------------- ....((((((((....((((.((((((.....(((((((.....)))))))......)))))).).)))....)))).(((((...---...)))))..)))).---------------- ( -31.30) >consensus UCCACUGUUUCAUCAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAUCAACCGCGCGAAAGUGAAAGUA__CAA___CAACGAGCGCAUAGAACAGCAUAAAAUAGAA ....((((((......(((.(((((.......(((((((.....)))))))..............(((....)))..............))))).)))....))))))............ (-22.96 = -23.60 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:36 2006