Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 349,931 – 350,031 |
Length | 100 |
Max. P | 0.784784 |
Location | 349,931 – 350,031 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 77.46 |
Mean single sequence MFE | -40.08 |
Consensus MFE | -29.83 |
Energy contribution | -31.20 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.22 |
Mean z-score | -1.64 |
Structure conservation index | 0.74 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 349931 100 + 22224390 U-------------CAACUGCCCGUUCGCCGCUCACACCCGUGGGCCAUUCCAAUCACUAGAGUGGGUGGAGUGUGAGAUGGGCGCCGAAAGUGCAUACAUUACAUGCCCAAG .-------------.....((((((((((.((((((....)))))).((((((..(((....)))..)))))))))).))))))(((....).)).................. ( -37.70) >DroSec_CAF1 10117 98 + 1 U-------------CAACUGCCCGUUCGCCGCUGACACUCGUGGGCCAUUCCAAUCACUA--GUGGGUGGAGUGUGAGAUGGGCGUCCAAAGUGGAUAUAUUACAUGCCCAAG .-------------.....((((((((((.(((.((....)).))).((((((..((...--.))..)))))))))).))))))((((.....))))................ ( -31.40) >DroEre_CAF1 4703 100 + 1 U-------------CCACUGCCCAUCUGCCGCCCACACCCGCGGACCAUUCCAACCACCCGGGUGGAUGGAGUGCGAGAUGGGCGCCCAAAGUGCAUGCACUGCAUGCCCAAG .-------------.....((((((((.((((........)))).((((((((.((((....)))).))))))).))))))))).......(.((((((...)))))).)... ( -45.70) >DroYak_CAF1 4593 113 + 1 CCACUGCCCCCUGCCCACUGCCCGUCUGCCGCCCACACCCGCGGGCGAGUCCAAUGCCUCGGGUGGACGGAGUGCGAGAUGGGCGCCCAAAGUGGAUGCAUUACAGCCCCAAG (((((......(((((((((((((((..((((((.(....).))))(((........))).))..)))))...)).)).)))))).....)))))..((......))...... ( -45.50) >consensus U_____________CAACUGCCCGUCCGCCGCCCACACCCGCGGGCCAUUCCAAUCACUAGGGUGGAUGGAGUGCGAGAUGGGCGCCCAAAGUGCAUACAUUACAUGCCCAAG ...................((((((((((.((((((....)))))).((((((.((((....)))).))))))))).))))))).......(.(((((.....))))).)... (-29.83 = -31.20 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:59 2006