Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 26,004 – 26,124 |
Length | 120 |
Max. P | 0.666139 |
Location | 26,004 – 26,124 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -25.39 |
Energy contribution | -26.20 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.73 |
Structure conservation index | 0.88 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 26004 120 - 22224390 CAGCUUACGAUGUCCAUCGACAAGUUCUACAAUAAAAGAAUUACGCACCAUGCGUCUUAAAUUUCGAUUCGAUUCAAUGGGCAACCGCUGAUUGACCACAUUGAACUGAUUGAGGAACAU .......((((....))))....(((((.((((...((....((((.....)))).......(((((((((((.((.(((....))).)))))))....)))))))).)))).))))).. ( -28.70) >DroSec_CAF1 13171 120 - 1 CAGCUUACGAUGCCCAUCGACAAGUUCCACAAUAAACGAAUUACGCACCAUGCGUCUUAAAUUUCGAUUUGAUUCAAUGGGCAGCCGCUGAUUGACCACAUUGAACUGAUUUAGGAACAU .......((((....))))....(((((..............((((.....))))..(((((((((((.((..(((((.(((....))).))))).)).)))))...))))))))))).. ( -28.80) >DroSim_CAF1 13465 120 - 1 CAGCUUACGAUGCCCAUCGACAAGUUCCACAAUAAACGAAUUACGCACCAUGCGUCUUAAAUUUCGAUUUGAUUCAAUGGGCAGCCGCUGAUUGACCACAUUGAACUGAUUUAGGAACAU .......((((....))))....(((((..............((((.....))))..(((((((((((.((..(((((.(((....))).))))).)).)))))...))))))))))).. ( -28.80) >DroYak_CAF1 7666 120 - 1 CAGCUUGCGAUGCCCAUCGACAAGUUCCACAAUAAAAGAAUUACGCACCAUUCGUCUCAAAUUUCGAUUUGAUUCAAUUGGCAGCCGCUGAUUGACCACAUUGAACUGAUUGAGGAACAU ....(((((((....)))).)))(((((.((((....((((........)))).........((((((.((..(((((..((....))..))))).)).))))))...)))).))))).. ( -29.70) >consensus CAGCUUACGAUGCCCAUCGACAAGUUCCACAAUAAAAGAAUUACGCACCAUGCGUCUUAAAUUUCGAUUUGAUUCAAUGGGCAGCCGCUGAUUGACCACAUUGAACUGAUUGAGGAACAU .......((((....))))....(((((.((((.........((((.....)))).......((((((.((..(((((.(((....))).))))).)).))))))...)))).))))).. (-25.39 = -26.20 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:04 2006