Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,510,882 – 2,510,986 |
Length | 104 |
Max. P | 0.884960 |
Location | 2,510,882 – 2,510,986 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 75.31 |
Mean single sequence MFE | -20.04 |
Consensus MFE | -14.13 |
Energy contribution | -15.01 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.09 |
Mean z-score | -1.73 |
Structure conservation index | 0.71 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2510882 104 - 22224390 GAUAAAAUGGAAACGAGGAAACUUGGAGAACAAAGUUUUUCGCUCUGACUUCGAAACGAUGACUUUAAAUAU---------AUACAUUAAGAGCAA-UCCAUUAUCAAUUGAUU ((((..(((((..((((....))))(((((......)))))(((((..........................---------........)))))..-)))))))))........ ( -20.88) >DroSec_CAF1 9387 102 - 1 GAUAAAAUGGAAACGAAGAAACUUGGAGAACAAAGUUUUUCGCUCUGACUACGAAACUCUGACUUUAAAUG-----------UACAUUAAGAGCAA-UCCAUUAUCAAUUGAUU ((((..(((((...((((((..(((.....)))..))))))(((((...((((................))-----------)).....)))))..-)))))))))........ ( -20.19) >DroSim_CAF1 10246 80 - 1 GAUAAAAUGGAAACGAAGAAACUUGGAGAACAAAGUUUUUCGCUCUGACUA---------------------------------CAUUAAGAGCAA-UCCAUUAUCAAUUGCUU ((((..(((((...((((((..(((.....)))..))))))(((((.....---------------------------------.....)))))..-)))))))))........ ( -21.00) >DroEre_CAF1 9756 114 - 1 GAUAACGUGGUAACGAAGAAACUUGCAGAACAACGUUAUUCGCUCCGAGUUCAAAGCGCUGACAUUAAAUAUAUGUAUGCUAUACAUUAAAAGCAAACGCAUUAUCAAUUGUUU ((((((((....)))........(((........((((..((((..(....)..)))).))))...........((.((((..........)))).))))))))))........ ( -18.10) >consensus GAUAAAAUGGAAACGAAGAAACUUGGAGAACAAAGUUUUUCGCUCUGACUACGAAACGCUGACUUUAAAUA___________UACAUUAAGAGCAA_UCCAUUAUCAAUUGAUU ((((..(((((...((((((..(((.....)))..))))))(((((...........................................)))))...)))))))))........ (-14.13 = -15.01 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:31 2006