Locus 897

Sequence ID X_DroMel_CAF1
Location 2,510,882 – 2,510,986
Length 104
Max. P 0.884960
window1453

overview

Window 3

Location 2,510,882 – 2,510,986
Length 104
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 75.31
Mean single sequence MFE -20.04
Consensus MFE -14.13
Energy contribution -15.01
Covariance contribution 0.87
Combinations/Pair 1.09
Mean z-score -1.73
Structure conservation index 0.71
SVM decision value 0.93
SVM RNA-class probability 0.884960
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2510882 104 - 22224390
GAUAAAAUGGAAACGAGGAAACUUGGAGAACAAAGUUUUUCGCUCUGACUUCGAAACGAUGACUUUAAAUAU---------AUACAUUAAGAGCAA-UCCAUUAUCAAUUGAUU
((((..(((((..((((....))))(((((......)))))(((((..........................---------........)))))..-)))))))))........ ( -20.88)
>DroSec_CAF1 9387 102 - 1
GAUAAAAUGGAAACGAAGAAACUUGGAGAACAAAGUUUUUCGCUCUGACUACGAAACUCUGACUUUAAAUG-----------UACAUUAAGAGCAA-UCCAUUAUCAAUUGAUU
((((..(((((...((((((..(((.....)))..))))))(((((...((((................))-----------)).....)))))..-)))))))))........ ( -20.19)
>DroSim_CAF1 10246 80 - 1
GAUAAAAUGGAAACGAAGAAACUUGGAGAACAAAGUUUUUCGCUCUGACUA---------------------------------CAUUAAGAGCAA-UCCAUUAUCAAUUGCUU
((((..(((((...((((((..(((.....)))..))))))(((((.....---------------------------------.....)))))..-)))))))))........ ( -21.00)
>DroEre_CAF1 9756 114 - 1
GAUAACGUGGUAACGAAGAAACUUGCAGAACAACGUUAUUCGCUCCGAGUUCAAAGCGCUGACAUUAAAUAUAUGUAUGCUAUACAUUAAAAGCAAACGCAUUAUCAAUUGUUU
((((((((....)))........(((........((((..((((..(....)..)))).))))...........((.((((..........)))).))))))))))........ ( -18.10)
>consensus
GAUAAAAUGGAAACGAAGAAACUUGGAGAACAAAGUUUUUCGCUCUGACUACGAAACGCUGACUUUAAAUA___________UACAUUAAGAGCAA_UCCAUUAUCAAUUGAUU
((((..(((((...((((((..(((.....)))..))))))(((((...........................................)))))...)))))))))........ (-14.13 = -15.01 +   0.87) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:31 2006