Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,510,147 – 2,510,264 |
Length | 117 |
Max. P | 0.707979 |
Location | 2,510,147 – 2,510,264 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.41 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -21.70 |
Energy contribution | -21.06 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.22 |
Mean z-score | -2.16 |
Structure conservation index | 0.69 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2510147 117 - 22224390 AAUCAAAAAUAAUAUAAAACGCUUAGCCAAAAGUGAACUUUGGUCAUGUGUGU--GU-UGUGCUAAGUACGUUUCCCUGUUAAUUGGGAACGGGAAACAGAGUGAAAUGGGACUGGGGGU ........(((((((...((((...((((((.(....)))))))...))))))--))-)))(((.(((.((((((((((((..(((....)))..))))).).))))))..)))...))) ( -30.80) >DroSec_CAF1 8697 117 - 1 UGCCAAAAAUAAUAUAAAAAGCUUAGCCGAAAGUGAACUUUGGUCAUGUGUGU--GU-UGUGCUAAGUACUUUUCCCUGUUAAUUGGGAACGGGGAACAGAGUGAAAUGGGACUGGGGGU ..(((.....((((((....((...(((.((((....)))))))...)).)))--))-)((.(((..((((((((((((((.......)))))))))..)))))...))).))))).... ( -31.50) >DroSim_CAF1 9569 117 - 1 AAUCAAAAAUAAUAUAAAACGCUUAGCCGAAAGUGAACUUUGGUCAUGUGUGU--GU-UGUGCUAAGUACUUUUCCCUGUUAAUUGGGAACGGGGAGCCGAGUGAAAUGAGACUGGGGGU ........(((((((...((((...(((.((((....)))))))...))))))--))-)))(((........(((((((((.......)))))))))((.(((........))).))))) ( -29.90) >DroEre_CAF1 9097 109 - 1 AAUCAAAAAUAAUAUAAAACGCUUAGCCGAAUGUGAACUUUGGCCAUGUGUGU--GUGUGUGCUAAGUACUUUUCCCUGUUAGUUGGGAACGGGGAAGAGA---------GAGUGGGGGU ...........(((((..((((...((((((.(....)))))))...))))..--.))))).(((..(.((((((((((((.......)))))))))))).---------)..))).... ( -33.40) >DroYak_CAF1 10341 109 - 1 AAUCAAAAAUAAUAUAAAACGCUUAGCCGAAAGUGAACUUUGGCCAUGUGUGUGUGUGUGUGCUAAGUACUUUUCUCUGUUAAUUGGGAACGGGGAAGAG-----------AGCGGGGGU ...........(((((..((((...(((.((((....)))))))...))))...)))))...((..((.((((((((((((.......))))))))))))-----------.))..)).. ( -32.50) >consensus AAUCAAAAAUAAUAUAAAACGCUUAGCCGAAAGUGAACUUUGGUCAUGUGUGU__GU_UGUGCUAAGUACUUUUCCCUGUUAAUUGGGAACGGGGAACAGAGUGAAAUG_GACUGGGGGU .(((..............((((...((((((.(....)))))))...))))........((((...))))..(((((((((.......)))))))))....................))) (-21.70 = -21.06 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:30 2006