Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,509,806 – 2,509,912 |
Length | 106 |
Max. P | 0.859496 |
Location | 2,509,806 – 2,509,912 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.55 |
Mean single sequence MFE | -27.28 |
Consensus MFE | -19.10 |
Energy contribution | -19.22 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.97 |
Structure conservation index | 0.70 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2509806 106 + 22224390 GCCUU---GUUUAUUUGUUUACAUUAAGCAACAACCCAACAU---------UGUUGUUGUUUUGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGAAC--UUGGCAA (((..---((((.(((((((.(...((((((((((.......---------.))))))))))(((((((....)))))))..................).)))))))))))--..))).. ( -28.60) >DroSec_CAF1 8347 102 + 1 GCCUU---GUUUAUUUGUUUACAUUAAGCA---ACCCAACAU---------UGUUGUUGUU-UGUCAUGUAAUUAUGAUAAGCAAGUGCAGUAAAAACGAAAACAAAGAAC--UUGGCAA (((..---((((.(((((((.(.....(((---...((((..---------.))))(((((-(((((((....)))))))))))).))).((....))).)))))))))))--..))).. ( -28.90) >DroSim_CAF1 9233 102 + 1 GCCUU---GUUUAUUUGUUUACAUUAAGCA---ACCCAACAU---------UGUUGUUGUU-CGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGAAC--UUGGCAA (((..---((((.(((((((.(.....(((---...(((((.---------...)))))..-.((((((....)))))).......))).((....))).)))))))))))--..))).. ( -24.20) >DroEre_CAF1 8786 105 + 1 GCCUUGUUGUUUAUUUGUUUACAUUAAGCA---ACCGAACGU---------UGUUGUUGUU-UGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGGAC--UUGGCAA (((..(((.(((.(((((((((....((((---((.....))---------)))).(((.(-(((((((....)))))))).))).....)))..))))))...))).)))--..))).. ( -26.10) >DroYak_CAF1 9983 116 + 1 GCCUUGUUGUUUAUUUGUUUACAUUAAGCA---ACCGAACGUUCUUGUUGUUGUUGUUGUU-UGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGGACUCUUGGCAA (((..((((((((..((....)).))))))---)).....(((((((((.(((((.(((((-(((((((....))))))))......))))....))))).))).))))))....))).. ( -28.60) >consensus GCCUU___GUUUAUUUGUUUACAUUAAGCA___ACCCAACAU_________UGUUGUUGUU_UGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGAAC__UUGGCAA (((.....((((.(((((((.(.....(((......(((((..........)))))(((...(((((((....)))))))..))).))).((....))).)))))))))))....))).. (-19.10 = -19.22 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:28 2006