Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,508,357 – 2,508,449 |
Length | 92 |
Max. P | 0.966986 |
Location | 2,508,357 – 2,508,449 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -16.04 |
Consensus MFE | -11.70 |
Energy contribution | -11.93 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.37 |
Structure conservation index | 0.73 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2508357 92 + 22224390 AAAAAACUACUUGAGUGGAAUCUUGGUAAAGUUUAUUUACUAUACCCAGAAUAAUAUUGAUUUGGUUUUCUUGCUUUUCUACUCUAGUACUG .......((((.(((((((((((.((((.(((......))).)))).))).............(((......))).)))))))).))))... ( -22.00) >DroSec_CAF1 6893 69 + 1 AAAAAACUACUUGA-UGGAAUCUUGG-AAAGUUUAUUUACU--ACCCAGAAUAAUAU-------------------UUCUACUCGAGUACUG .......(((((((-((((((((.((-..(((......)))--..))))).......-------------------))))).)))))))... ( -12.91) >DroSim_CAF1 7799 69 + 1 AAAAAACUACUUGA-UGGAAUCUUGG-AAAGUUUAUUUACU--ACCCAGAAUAAUAU-------------------UUCUACUCAAGUACUG .......(((((((-((((((((.((-..(((......)))--..))))).......-------------------))))).)))))))... ( -13.21) >consensus AAAAAACUACUUGA_UGGAAUCUUGG_AAAGUUUAUUUACU__ACCCAGAAUAAUAU___________________UUCUACUCAAGUACUG .......(((((((.((((((((.((...(((......)))...)).)))..........................))))).)))))))... (-11.70 = -11.93 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:27 2006