Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,508,120 – 2,508,211 |
Length | 91 |
Max. P | 0.539951 |
Location | 2,508,120 – 2,508,211 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 88.81 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -27.92 |
Energy contribution | -27.37 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.11 |
Mean z-score | -1.14 |
Structure conservation index | 0.95 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2508120 91 + 22224390 CUGGUGGUCCGGUGGCAUCUGGUCUGAACCGAAUCUGACGCAACUUGACCCAAGUUGCUUGGCAUCGAUCUUCCAGUGCACUAGCACCUUG .(((.((..(((((.((....(((.((......)).)))((((((((...)))))))).)).)))))..)).)))((((....)))).... ( -31.20) >DroSec_CAF1 6675 86 + 1 CCA-----CCGGUGGCGUCUGGACUGAACCGAAUCUGACGCAACUUUGCCAAAGUUGCUUGGGAUCGAUCUUCCGGUGCACUAGCACCUAG ...-----..(((((((.(((((..((..(((.((..(.(((((((.....))))))))..)).))).)).)))))))).....))))... ( -27.80) >DroSim_CAF1 7581 86 + 1 CCA-----CCGGUGGCGUCUGGUCUGAACCGAAUCUGACGCAACUUGGCCCAAGUUGCUUGGGAUCGAUCUUCCGGUGCACUAGCACCUAG .((-----((((.((.(((.(((....)))((.((..(.((((((((...)))))))))..)).))))))).))))))..((((...)))) ( -29.50) >consensus CCA_____CCGGUGGCGUCUGGUCUGAACCGAAUCUGACGCAACUUGGCCCAAGUUGCUUGGGAUCGAUCUUCCGGUGCACUAGCACCUAG ..........(((((((.((((...((..(((.((..(.((((((((...)))))))))..)).))).))..))))))).....))))... (-27.92 = -27.37 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:26 2006