Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,506,252 – 2,506,366 |
Length | 114 |
Max. P | 0.585813 |
Location | 2,506,252 – 2,506,366 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.77 |
Mean single sequence MFE | -34.08 |
Consensus MFE | -22.64 |
Energy contribution | -24.07 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.66 |
Structure conservation index | 0.66 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2506252 114 + 22224390 UCAGGACUUACUCUUCCUGUAUGACGGGAAUUAACUCGUCGAUAUCCACUCGUCGUUUGUUCAGU---AACUGUCAUCGGGU---GGUGGUUUCGAUUGAAUUGAUUGACAGCGAGUGAC .(((((........)))))..(((((((......))))))).....(((((((.(((.(((((((---(((..((((...))---))..)))...))))))).....))).))))))).. ( -36.60) >DroSec_CAF1 4860 114 + 1 UCAGGACCUACUCUUCCUGUAUGACGGGAAUUAACUCGUCGAUAUCCACUCGUCGUUUGAUCAGU---AACUGUCAUCAGGU---GGUGGUUUCGAUGGAAUUGAUUGACAGCGAGUGAC .(((((........)))))..(((((((......))))))).....(((((((.(.(..((((((---(((..((((...))---))..)))((....))))))))..)).))))))).. ( -36.00) >DroSim_CAF1 5763 114 + 1 UCAGGACUCACUCUUCCUGUAUGACGGGAAUUAACUCGUCGCUAUCCACUCGUCGUUUGAUCAGU---AACUGUCAUCAGGU---GGUGGUUUCGAUGGAAUUGAUUGACAGCGAGUGAC .(((((........)))))...((((((......))))))......(((((((.(.(..((((((---(((..((((...))---))..)))((....))))))))..)).))))))).. ( -35.70) >DroEre_CAF1 5278 96 + 1 UCAGGACUUUCUCUUCCUGUAUG---------A---------------CGCGUCGGUUGAUCAGUCAGAACUGUCAUCAGGUUUAGAUAGUUUCGAUGGAAUUGAUUGACGGCAAGUGAC .(((((........)))))..((---------.---------------(.(((((((..(((.(((..(((((((..........)))))))..))).).))..))))))))))...... ( -28.00) >consensus UCAGGACUUACUCUUCCUGUAUGACGGGAAUUAACUCGUCGAUAUCCACUCGUCGUUUGAUCAGU___AACUGUCAUCAGGU___GGUGGUUUCGAUGGAAUUGAUUGACAGCGAGUGAC .(((((........)))))...((((((......))))))......(((((((.(.(((((((((.....(((....))).....((.....))......)))))))))).))))))).. (-22.64 = -24.07 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:21 2006