Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,505,330 – 2,505,441 |
Length | 111 |
Max. P | 0.627635 |
Location | 2,505,330 – 2,505,441 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.49 |
Mean single sequence MFE | -20.85 |
Consensus MFE | -16.26 |
Energy contribution | -16.57 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.06 |
Mean z-score | -1.55 |
Structure conservation index | 0.78 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2505330 111 - 22224390 --AGCCAUAUAAUUCCGACUUUUAGUCGUUUCAAGCGCGUCAUCGUAAACGUCA-------UUAUGCCAUACAUACAAAAACAACAAGCAAACAAUGUAAAUCGAGACGUGCAAAUAUUU --.............((((.....))))......(((((((.(((...((((..-------((.(((....................)))))..))))....))))))))))........ ( -20.75) >DroSec_CAF1 4042 109 - 1 --A-CCAUAUAAUUCCGACUUUUCGUCGAUUCAAGCGCGUCAUCGUAAGCGUCA-------UUAUGCCAUAAAUACAAAAACAACAAGCUGA-AAUGUAAAUCGAGACGUGCAAAUAUUU --.-...........((((.....))))......(((((((.(((...((((..-------..))))......((((....((......)).-..))))...))))))))))........ ( -21.20) >DroEre_CAF1 4306 112 - 1 CAAGCCAUAUAAUUUCGACUUUUGCUCGUUUUAAGCGCGUCAUCGUAAGCGUCA-------AUAUGCCAUAAAUACAAAAACAACAAGCUGA-AAUGUUAAUCGAGACGUGCAAAUAUUU .........(((...((((....).)))..))).(((((((.(((...((((..-------..))))...............((((......-..))))...))))))))))........ ( -18.20) >DroYak_CAF1 5305 114 - 1 -----CAUAACAUUUCGACUUUUGGUCGUAUUAAGCGCGUCAUCGUUAGCGAUAAAUACAAAAAUGCCAUAAAUACAAAAACAACAAGCAGA-AAUGUAAAUCGAGACGUGCAAAUAUUU -----..........((((.....))))......(((((((((((....))))...((((....(((....................)))..-..))))......)))))))........ ( -23.25) >consensus __A_CCAUAUAAUUCCGACUUUUGGUCGUUUCAAGCGCGUCAUCGUAAGCGUCA_______AUAUGCCAUAAAUACAAAAACAACAAGCAGA_AAUGUAAAUCGAGACGUGCAAAUAUUU ...............((((.....))))......(((((((.(((...((((..........................................))))....))))))))))........ (-16.26 = -16.57 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:20 2006