Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,502,115 – 2,502,215 |
Length | 100 |
Max. P | 0.758377 |
Location | 2,502,115 – 2,502,215 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 80.33 |
Mean single sequence MFE | -30.67 |
Consensus MFE | -24.50 |
Energy contribution | -24.87 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.14 |
Mean z-score | -1.57 |
Structure conservation index | 0.80 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758377 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2502115 100 - 22224390 AGCUAAUUUGCAUGCGGUGCGUGAGUGUGCUAGCUGCAUGUGCGAGUGUGCGAGUGUGUGCGUAUUUGUUAGUACGCUGCGCCGGAAUUUCUCAUGUGUC .((......)).(.((((((...(((((((((((((((((..(..(....)..)..)))))).....))))))))))))))))).).............. ( -35.30) >DroEre_CAF1 822 82 - 1 AGCUAAUUUGCAUGCGGUGCGUAAGUAUGCUAGCUGCAUGUGUGU------------------GUGUGUUAGUGCGCUGCGCCGGAAUUUCUCGUGUGUC .........(((((((((((...(((..(((((((((((....))------------------))).))))))..)))))))).((.....)))))))). ( -24.80) >DroYak_CAF1 1939 100 - 1 AGCUAAUUUGCAUGCGGUGCGUGAGUGUGCUAGCUGCAUGUGUGUCAGUGCAUUUGUAUGUGUAUUUGUUAGUGCGCUGCGCCGGAAUUUCUCAUGUGUC .((......))....((..((((((.((((.....))))(.(((.(((((((((..((........))..))))))))))))).......))))))..)) ( -31.90) >consensus AGCUAAUUUGCAUGCGGUGCGUGAGUGUGCUAGCUGCAUGUGUGU__GUGC___UGU_UG_GUAUUUGUUAGUGCGCUGCGCCGGAAUUUCUCAUGUGUC .........(((((((((((...(((((((((((.((....))....(((((........)))))..)))))))))))))))))........)))))... (-24.50 = -24.87 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:16 2006