Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,499,518 – 2,499,632 |
Length | 114 |
Max. P | 0.777307 |
Location | 2,499,518 – 2,499,632 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 94.47 |
Mean single sequence MFE | -36.93 |
Consensus MFE | -30.80 |
Energy contribution | -30.67 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.83 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2499518 114 + 22224390 UGCUGCGCUGCAGUCGACAGCGCGGCGACUGCGACGCCUUUAGCGCUGCAGAAGUUUUCGACAGCAGA-AAACAGAAAUAACAAAAGGAAGUGGCUGAGCAAAAGAAGGUCAACA .((((((((((....).)))))))))..(((((.(((.....))).)))))..((((((.......))-))))..................(((((...(....)..)))))... ( -37.50) >DroSec_CAF1 18127 114 + 1 UGCUGCGCUGCAGUCGACAGCGCGGCGACUGCGACGCCGUUAGCGCUGCAGAAGUUUUCGCCAGCAGA-GAACAGAAAUAACAAAAGGAAGUGGCUGAGGAAAAGAAGGUCAACA .((((((((((....).)))))))))..(((((.(((.....))).)))))..((((((.......))-))))..................(((((...........)))))... ( -36.70) >DroEre_CAF1 18605 114 + 1 UGCUGCGCUGCAGUCGACAGCGCGGCGACGGCUACGCCGAUAGCGCUGCAGAAGUUUUCGCCAGCAGA-AAACAGAAAUAACAAAAGGAAGUGGCUGCGGAAAAGAAGGUCAACA .((((((((((....).)))))))))(((.((((......)))).((((((..((((((.......))-)))).......((........))..))))))........))).... ( -37.60) >DroYak_CAF1 18052 115 + 1 UGCUGCGCUGCUGUCGACAGCGCGGCGACUGCUACGCCGAUAGCGCUGCAGAAGUUUUUGCGAGCAGAGAAACAGAAAUAACAAAAGGAAGUGGCUGAGGAAAAGAAGGUCAACA .((((((((((....).)))))))))((((......((..((((((((((((....))))).)))...............((........)).)))).)).......)))).... ( -35.92) >consensus UGCUGCGCUGCAGUCGACAGCGCGGCGACUGCGACGCCGAUAGCGCUGCAGAAGUUUUCGCCAGCAGA_AAACAGAAAUAACAAAAGGAAGUGGCUGAGGAAAAGAAGGUCAACA .((((((((((....).)))))))))..((((..(((.....)))..))))..((((((.......)).))))..................(((((...........)))))... (-30.80 = -30.67 + -0.12)
Location | 2,499,518 – 2,499,632 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 94.47 |
Mean single sequence MFE | -33.38 |
Consensus MFE | -29.42 |
Energy contribution | -30.42 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.88 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2499518 114 - 22224390 UGUUGACCUUCUUUUGCUCAGCCACUUCCUUUUGUUAUUUCUGUUU-UCUGCUGUCGAAAACUUCUGCAGCGCUAAAGGCGUCGCAGUCGCCGCGCUGUCGACUGCAGCGCAGCA .(((((.(.......).)))))....................((((-((.......))))))..((((.((((.....)))).))))..((.(((((((.....))))))).)). ( -34.40) >DroSec_CAF1 18127 114 - 1 UGUUGACCUUCUUUUCCUCAGCCACUUCCUUUUGUUAUUUCUGUUC-UCUGCUGGCGAAAACUUCUGCAGCGCUAACGGCGUCGCAGUCGCCGCGCUGUCGACUGCAGCGCAGCA .(((((...........)))))........................-...((((((((......((((.((((.....)))).)))))))))(((((((.....)))))))))). ( -36.70) >DroEre_CAF1 18605 114 - 1 UGUUGACCUUCUUUUCCGCAGCCACUUCCUUUUGUUAUUUCUGUUU-UCUGCUGGCGAAAACUUCUGCAGCGCUAUCGGCGUAGCCGUCGCCGCGCUGUCGACUGCAGCGCAGCA .((((......((((((.((((........................-...))))).)))))......))))(((...((((.......))))(((((((.....)))))))))). ( -31.93) >DroYak_CAF1 18052 115 - 1 UGUUGACCUUCUUUUCCUCAGCCACUUCCUUUUGUUAUUUCUGUUUCUCUGCUCGCAAAAACUUCUGCAGCGCUAUCGGCGUAGCAGUCGCCGCGCUGUCGACAGCAGCGCAGCA .(((((...........)))))..........................(((((.(((........))).((((.....)))))))))..((.(((((((.....))))))).)). ( -30.50) >consensus UGUUGACCUUCUUUUCCUCAGCCACUUCCUUUUGUUAUUUCUGUUU_UCUGCUGGCGAAAACUUCUGCAGCGCUAACGGCGUAGCAGUCGCCGCGCUGUCGACUGCAGCGCAGCA .((((.............))))............................((((((((......((((.((((.....)))).)))))))))(((((((.....)))))))))). (-29.42 = -30.42 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:15 2006