| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,494,268 – 2,494,368 |
| Length | 100 |
| Max. P | 0.967395 |
| Location | 2,494,268 – 2,494,368 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.06 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -16.87 |
| Energy contribution | -16.77 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2494268 100 + 22224390 GUUUUGCGUGAUCCAAAAAUGGGGGGGUUUCCCCUUGAAUUGACCAAUCGGCGGAAAAACAAUAACUUAACCUGUACUUAGGUGGCCAAAAAAAAAAAGA .(((((.((..(((......((((((....)))))).....(.((....))))))..............(((((....))))).)))))))......... ( -20.60) >DroSec_CAF1 12927 76 + 1 --UUUGCGUGAUCCAAAAAUAGGGGGGUUUCCCCUUGAGCUGACCAACCGGCGGAAAAACAAUAACUUC----------------------AAAAAAAGA --.....((..(((.....(((((((....))))))).((((......)))))))...)).........----------------------......... ( -19.40) >DroSim_CAF1 10121 78 + 1 GAUUUGCGUGAUCCAAAAAUAGGGGGUUUUCCCCUUGAGCUGACCAACCGGCGGAAAAACAAUAACUUC----------------------AAAAAAAGA .......((..(((.....(((((((....))))))).((((......)))))))...)).........----------------------......... ( -19.70) >consensus G_UUUGCGUGAUCCAAAAAUAGGGGGGUUUCCCCUUGAGCUGACCAACCGGCGGAAAAACAAUAACUUC______________________AAAAAAAGA .......((..(((.....(((((((....))))))).((((......)))))))...))........................................ (-16.87 = -16.77 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:12 2006