Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,474,999 – 2,475,092 |
Length | 93 |
Max. P | 0.599532 |
Location | 2,474,999 – 2,475,092 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.69 |
Mean single sequence MFE | -28.95 |
Consensus MFE | -21.13 |
Energy contribution | -20.67 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.31 |
Mean z-score | -0.82 |
Structure conservation index | 0.73 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2474999 93 - 22224390 CUUCAUUGACUUUGCCCAGCAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUGAUGCAGA----AUCAUUGAUA----------------------- ..(((.(((.(((((.((((...(.((((.((.(((((((((.........)))))).))).)))))).)..))))..)))))----.))).)))..----------------------- ( -28.80) >DroPse_CAF1 5823 88 - 1 UUUUGUAGACUUUGCCCAGCAAGAGUUCAAAUGCUGCGGACUUAGUAAUGCUGGCUACCAGGAUUGGGGUAAGUUCACGCC--------CAUUGC------------A------------ ....((..((((.((((.....((((((.........))))))..((((.((((...)))).))))))))))))..))((.--------....))------------.------------ ( -23.40) >DroSec_CAF1 1407 93 - 1 CUUCAUUGACUUUGCUCAGCAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUGAUGCAGA----AACAUUGGUU----------------------- ..(((.((..((((((((((...(.((((.((.(((((((((.........)))))).))).)))))).)..))))).)))))----..)).)))..----------------------- ( -28.10) >DroSim_CAF1 409 93 - 1 CUUCAUUGACUUUGCUCAGCAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUGAUGCAGA----AACAUUGGUU----------------------- ..(((.((..((((((((((...(.((((.((.(((((((((.........)))))).))).)))))).)..))))).)))))----..)).)))..----------------------- ( -28.10) >DroEre_CAF1 1712 116 - 1 CUUCAUUGACUUUGCCCAACAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUAAUACACG----AUCCCUCAUAAAAAUGUAACAAGUCGUGUGCAC ....((((((.(..((((((....)))..(((.(((((((((.........)))))).))).))))).)..)))))))(((((----((....(((....)))......))))))).... ( -29.70) >DroYak_CAF1 477 113 - 1 CUUCAUUGACUUUGCCCAGCAGGAGUUCAAGUGCUGUGGCCUCAGCAACUCGGGCUACCAGGACUGGAGUGAGUUAAUGCUGCGUGAAUCACUGAG-----CAUCGCAAGCAA--UUCAC ...(((((((.(..((((((.(((((((.(((((((......)))).))).))))).))..).)))).)..))))))))....((((((..((..(-----(...)).))..)--))))) ( -35.60) >consensus CUUCAUUGACUUUGCCCAGCAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUGAUGCAGA____AUCAUUGAU________________________ ...(((((((((...(((((.(((((((...(((((......)))))....))))).))..).))))...)))))))))......................................... (-21.13 = -20.67 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:08 2006